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AGM11780.1

Arc-Vir

KC292028__AGM11780.1__HCTV2-3__00003

Identity

Accession:
KC292028 ↗
Protein ID:
AGM11780.1 ↗
Kingdom:
archaea

Quality

56.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Saparoviridae› Samsavirus› Haloarcula_californiae_tailed_virus_2

TaxID: 1273747

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-86
PDB
Domain cluster: representative
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
8dq6A01 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.63 48.0 4.45e-01 82.1% 98.0%
2cg5B00 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.61 47.0 4.91e-01 87.2% 91.5%
4neoA00 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.60 47.0 4.65e-01 97.4% 81.9%
1u84A00 1.10.340.20 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Apc36109-like domain 0.59 43.0 4.31e-01 84.6% 75.3%
1dnyA00 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.59 46.0 4.74e-01 97.4% 89.5%
1vw4801 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.59 42.0 4.38e-01 97.4% 82.2%
4bqqB02 3.90.1750.20 Alpha Beta › Alpha-Beta Complex › Hect, E3 ligase catalytic domain fold › Putative Large Serine Recombinase; Chain B, Domain 2 0.58 46.0 3.50e-01 87.2% 49.5%
4pxhB00 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.57 44.0 4.52e-01 97.4% 90.7%
2ltuA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.56 37.0 4.07e-01 70.5% 83.9%
4h2wC00 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.56 46.0 4.62e-01 96.2% 92.3%
2ju1A00 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.56 46.0 4.35e-01 97.4% 75.8%
2rijA01 3.30.70.2010 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 47.0 3.77e-01 96.2% 67.5%
7x0fB01 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.56 42.0 4.36e-01 94.9% 90.4%
2cgqA00 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.56 43.0 4.41e-01 96.2% 91.9%
6fhpD00 1.10.390.10 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 0.55 38.0 4.21e-01 80.8% 90.3%
4h2uD00 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.55 43.0 4.34e-01 97.4% 87.2%
3l0iA01 1.20.120.1520 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.55 41.0 3.21e-01 82.1% 68.2%
2cpmA00 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.54 31.0 3.00e-01 100.0% 46.8%
5mswA01 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.54 42.0 4.08e-01 96.2% 76.1%
3b46A02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.53 41.0 2.88e-01 83.3% 86.7%
1ebdC00 4.10.320.10 Few Secondary Structures › Irregular › Dihydrolipoamide Transferase › E3-binding domain 0.52 24.0 3.21e-01 88.5% 82.9%
2hszA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.52 39.0 4.01e-01 84.6% 82.7%
4v19K02 1.10.10.250 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ribosomal protein L11/L12, C-terminal domain 0.52 38.0 3.86e-01 78.2% 92.0%
4pg4A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.51 44.0 3.42e-01 92.3% 95.7%
4ix7A00 1.10.10.2590 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › BEN domain 0.51 40.0 3.60e-01 87.2% 66.7%
1fxkB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.51 30.0 2.71e-01 87.2% 39.4%
2hi6A00 3.50.30.10 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › Phosphohistidine domain 0.51 44.0 3.76e-01 98.7% 100.0%
5mmiJ02 1.10.10.250 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ribosomal protein L11/L12, C-terminal domain 0.50 37.0 3.87e-01 80.8% 94.2%
2jo7A00 1.10.4170.10 Mainly Alpha › Orthogonal Bundle › Glycosylphosphatidylinositol-anchored merozoite surface protein › Glycosylphosphatidylinositol-anchored merozoite surface protein 0.50 36.0 2.63e-01 75.6% 68.8%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2884306 523.1.1.2 ↗ a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal_bL9m_C 0.64 44.0 4.10e-01 98.7% 56.0%
4017776 132.1.1.1 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding 0.63 49.0 4.65e-01 97.4% 69.5%
4323814 523.1.1.1 ↗ a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal_L9_C 0.63 45.0 4.26e-01 97.4% 62.8%
4056659 523.1.1.1 ↗ a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal_L9_C 0.61 44.0 4.18e-01 98.7% 63.4%
4112855 523.1.1.1 ↗ a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal_L9_C 0.61 45.0 4.29e-01 98.7% 66.7%
4227360 523.1.1.1 ↗ a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal_L9_C 0.61 44.0 4.14e-01 98.7% 62.8%
4431299 523.1.1.1 ↗ a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal_L9_C 0.61 45.0 4.28e-01 98.7% 66.7%
4010953 132.1.1.1 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding 0.61 49.0 4.53e-01 97.4% 67.6%
3255807 523.1.1.0 ↗ a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain 0.59 43.0 4.18e-01 98.7% 67.8%
3287937 132.1.1.1 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding 0.58 46.0 4.52e-01 97.4% 80.0%
4015567 132.1.1.0 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) 0.58 46.0 4.57e-01 98.7% 85.0%
3970133 132.1.1.0 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) 0.58 45.0 4.53e-01 97.4% 85.0%
4587402 132.1.1.1 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding 0.57 47.0 4.53e-01 97.4% 80.0%
3582699 132.1.1.1 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding 0.57 45.0 4.39e-01 98.7% 76.7%
3959794 132.1.1.0 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) 0.57 45.0 4.25e-01 98.7% 70.0%
3277917 132.1.1.1 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding 0.57 46.0 3.92e-01 97.4% 53.3%
3026397 132.1.1.1 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding 0.57 45.0 4.54e-01 98.7% 88.5%
3961879 132.1.1.1 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding 0.56 44.0 4.19e-01 97.4% 71.6%
3256511 132.1.1.1 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding 0.56 43.0 4.44e-01 94.9% 92.9%
2581395 132.1.1.1 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding 0.56 44.0 4.47e-01 94.9% 88.5%
1170035 132.1.1.1 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding 0.56 44.0 4.46e-01 92.3% 87.2%
3956327 132.1.1.1 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding 0.56 44.0 4.16e-01 96.2% 69.0%
3434561 101.1.6.36 ↗ alpha arrays › HTH › HTH › TrpR › PF28509 0.56 42.0 3.60e-01 82.1% 73.1%
3354568 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.56 41.0 3.71e-01 79.5% 85.5%
4266166 132.1.1.1 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding 0.56 44.0 4.08e-01 98.7% 66.7%
3960323 132.1.1.1 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding 0.56 44.0 4.42e-01 96.2% 87.3%
4044284 132.1.1.1 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding 0.55 45.0 4.42e-01 97.4% 84.7%
4219491 132.1.1.1 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding 0.55 46.0 4.39e-01 97.4% 77.9%
3952490 132.1.1.1 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding 0.55 43.0 4.22e-01 97.4% 78.9%
4518850 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 43.0 2.75e-01 94.9% 15.3%
4046224 132.1.1.1 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding 0.55 44.0 4.37e-01 96.2% 85.7%
3587621 605.1.1.129 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › MobL 0.54 43.0 3.49e-01 87.2% 74.8%
3726891 132.1.1.1 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding 0.54 44.0 4.23e-01 97.4% 78.9%
3288850 132.1.1.1 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding 0.54 42.0 3.98e-01 98.7% 70.0%
4018510 132.1.1.1 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding 0.54 42.0 4.05e-01 97.4% 74.7%
3277050 132.1.1.1 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding 0.53 42.0 4.12e-01 96.2% 82.4%
4018978 132.1.1.6 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › DUF7080 0.53 43.0 4.16e-01 97.4% 82.2%
3856853 101.1.1.53 ↗ alpha arrays › HTH › HTH › Three-helical HTH › BEN 0.53 40.0 3.72e-01 84.6% 68.6%
3312431 101.1.1.121 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.53 45.0 3.82e-01 93.6% 95.2%
3554465 101.1.1.8 ↗ alpha arrays › HTH › HTH › Three-helical HTH › TEA 0.52 36.0 3.83e-01 98.7% 81.4%
4429100 3018.1.1.1 ↗ a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS 0.51 39.0 3.81e-01 84.6% 83.3%
4945801 101.1.16.0 ↗ alpha arrays › HTH › HTH › Ribosomal protein L11, C-terminal domain 0.51 40.0 3.90e-01 89.7% 88.9%
4388318 161.1.1.1 ↗ alpha complex topology › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › SecA_SW 0.50 35.0 2.69e-01 88.5% 27.4%
3442297 101.1.1.121 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.50 42.0 4.11e-01 92.3% 90.5%
D2 high residues 106-152
PDB