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AGM11793.1

Arc-Vir

KC292028__AGM11793.1__HCTV2-19__00019

Identity

Accession:
KC292028 ↗
Protein ID:
AGM11793.1 ↗
Kingdom:
archaea

Quality

74.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Saparoviridae› Samsavirus› Haloarcula_californiae_tailed_virus_2

TaxID: 1273747

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-96
PDB
Domain cluster: representative
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3udcA02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.75 40.0 5.33e-01 98.9% 96.0%
1irxA02 2.30.30.300 Mainly Beta › Roll › SH3 type barrels. › class i lysyl-tRNA synthetase like 0.73 35.0 4.77e-01 92.2% 95.3%
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.72 40.0 5.23e-01 98.9% 100.0%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.72 38.0 5.00e-01 96.7% 97.9%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 41.0 4.59e-01 100.0% 75.4%
2ldmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 40.0 4.99e-01 96.7% 96.2%
7razA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.68 40.0 4.20e-01 100.0% 63.5%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.68 39.0 4.97e-01 96.7% 100.0%
3npfA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 46.0 5.19e-01 70.0% 97.1%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 42.0 4.67e-01 100.0% 78.9%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 41.0 4.65e-01 100.0% 80.9%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.67 41.0 4.55e-01 100.0% 77.8%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.67 40.0 4.58e-01 71.1% 81.8%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 40.0 4.55e-01 100.0% 81.8%
2m3xC02 2.40.10.360 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.66 30.0 3.34e-01 81.1% 52.2%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 39.0 4.75e-01 98.9% 96.4%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 44.0 4.89e-01 70.0% 94.3%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.64 44.0 4.76e-01 100.0% 83.1%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 39.0 4.66e-01 71.1% 90.3%
1awoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 39.0 4.58e-01 96.7% 98.2%
3npfB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 43.0 4.88e-01 100.0% 98.5%
1ssfA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 36.0 4.34e-01 97.8% 94.5%
2kjzA01 3.30.720.120 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.59 28.0 3.47e-01 92.2% 70.4%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 39.0 4.52e-01 100.0% 96.8%
3j7yD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.58 44.0 4.67e-01 100.0% 90.1%
2kxcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 40.0 4.51e-01 95.6% 98.5%
2dl5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 38.0 4.02e-01 97.8% 79.5%
4f88102 3.90.1720.60 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.57 49.0 3.68e-01 94.4% 75.1%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 41.0 4.59e-01 88.9% 100.0%
1vwxA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 43.0 4.57e-01 100.0% 95.0%
2vobB02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.54 40.0 3.01e-01 77.8% 51.4%
6g6qA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 45.0 3.87e-01 93.3% 72.9%
4b1bA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 43.0 2.79e-01 90.0% 54.2%
4py5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.53 27.0 3.03e-01 80.0% 59.7%
1fx7B03 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.52 42.0 4.38e-01 100.0% 98.8%
1t3aA00 3.90.1240.10 Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" 0.51 39.0 2.64e-01 85.6% 77.2%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4368811 4.1.1.364 ↗ beta barrels › SH3 › SH3 › SH3 › GatD_N 0.81 45.0 5.67e-01 100.0% 90.9%
5042477 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 38.0 5.26e-01 96.7% 97.8%
3404936 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.76 40.0 5.26e-01 96.7% 94.0%
5028741 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 45.0 5.60e-01 100.0% 100.0%
3270324 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.73 40.0 5.25e-01 96.7% 98.0%
3546607 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.73 39.0 5.02e-01 96.7% 94.0%
3414063 4.1.1.233 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.72 43.0 5.44e-01 98.9% 100.0%
3839016 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.71 48.0 5.65e-01 100.0% 95.4%
3721116 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 44.0 4.55e-01 98.9% 65.9%
5080336 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 46.0 5.47e-01 100.0% 93.8%
3486496 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 42.0 5.29e-01 98.9% 98.2%
4017956 109.1.1.35 ↗ alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › PF25907 0.71 46.0 3.17e-01 98.9% 21.5%
5033600 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 36.0 4.89e-01 92.2% 93.9%
3696482 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 45.0 4.53e-01 100.0% 65.2%
4949848 4.1.1.364 ↗ beta barrels › SH3 › SH3 › SH3 › GatD_N 0.70 40.0 5.01e-01 100.0% 94.5%
4252954 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.70 49.0 5.59e-01 100.0% 94.3%
4068333 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.70 48.0 5.59e-01 98.9% 98.5%
3839042 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 35.0 4.87e-01 90.0% 100.0%
3420348 4.1.1.306 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_VIII-1_N 0.69 41.0 5.11e-01 100.0% 98.2%
3264883 4.1.1.304 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-C_UBE2O 0.69 41.0 5.03e-01 100.0% 98.2%
4844109 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.69 41.0 4.53e-01 71.1% 74.6%
3419491 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 44.0 5.24e-01 100.0% 98.3%
3998022 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.68 38.0 4.74e-01 97.8% 90.9%
3428486 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.68 40.0 4.21e-01 100.0% 65.0%
1263586 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 46.0 5.10e-01 70.0% 97.2%
3326980 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.68 40.0 4.79e-01 100.0% 88.3%
3817476 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.67 38.0 4.81e-01 100.0% 100.0%
3616007 4.1.1.233 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.67 41.0 5.05e-01 97.8% 100.0%
3495480 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.67 43.0 5.04e-01 71.1% 96.7%
4226849 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.67 48.0 5.10e-01 97.8% 83.7%
4027422 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.67 39.0 4.85e-01 100.0% 96.4%
3494765 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.66 43.0 3.19e-01 71.1% 26.8%
1884741 4.1.1.130 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_19 0.66 39.0 4.71e-01 100.0% 91.5%
4321173 4.1.1.98 ↗ beta barrels › SH3 › SH3 › SH3 › ProQ_C 0.66 42.0 5.08e-01 88.9% 100.0%
3934126 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 42.0 5.02e-01 98.9% 98.3%
3554026 4.1.1.233 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.65 41.0 4.87e-01 100.0% 95.0%
1145920 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.65 39.0 4.03e-01 70.0% 63.9%
3649741 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.65 39.0 4.26e-01 100.0% 72.0%
4995901 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 37.0 4.49e-01 100.0% 90.9%
3929373 4.1.1.233 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.65 42.0 5.00e-01 98.9% 100.0%
4083915 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.65 49.0 5.39e-01 95.6% 96.0%
3587555 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 44.0 4.89e-01 95.6% 92.9%
3903213 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.63 39.0 3.12e-01 73.3% 32.0%
3484007 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 42.0 4.68e-01 100.0% 88.6%
3898952 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.62 43.0 4.65e-01 100.0% 85.3%
3574613 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.62 39.0 3.78e-01 73.3% 56.0%
3930643 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 40.0 4.73e-01 100.0% 98.3%
3236054 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.62 45.0 4.87e-01 76.7% 98.7%
3222210 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.61 45.0 5.03e-01 100.0% 98.6%
3926672 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 42.0 4.81e-01 100.0% 98.5%
4998870 4.1.1.483 ↗ beta barrels › SH3 › SH3 › SH3 › RRXRR 0.58 40.0 4.09e-01 77.8% 75.3%
4998726 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 39.0 4.15e-01 77.8% 80.0%
3443078 4.1.1.330 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O, SH3-C_UBE2O 0.55 41.0 3.31e-01 86.7% 40.6%
None — 0.50 42.0 2.36e-01 94.4% 37.6%