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AGM11800.1

Arc-Vir

KC292028__AGM11800.1__HCTV2-26__00026

Identity

Accession:
KC292028 ↗
Protein ID:
AGM11800.1 ↗
Kingdom:
archaea

Quality

85.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Saparoviridae› Samsavirus› Haloarcula_californiae_tailed_virus_2

TaxID: 1273747

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 30-88
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2m8gX00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.84 61.0 5.76e-01 93.2% 64.3%
4iejA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.78 59.0 5.47e-01 94.9% 64.0%
3onqA03 1.10.10.2840 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PucR C-terminal helix-turn-helix domain 0.74 58.0 4.42e-01 86.4% 38.2%
4izzB02 1.10.10.1680 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › HetR, N-terminal DNA-binding domain 0.72 52.0 5.00e-01 94.9% 67.6%
1wgnA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.69 43.0 4.23e-01 72.9% 58.7%
2damA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.68 43.0 4.15e-01 71.2% 56.7%
4jb3A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.66 54.0 5.17e-01 94.9% 81.9%
4dccA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.65 54.0 5.06e-01 94.9% 81.1%
3mfiA03 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.63 50.0 4.69e-01 93.2% 82.9%
2cmpA00 1.10.10.1400 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Terminase, small subunit, N-terminal DNA-binding domain, HTH motif 0.63 51.0 5.19e-01 93.2% 94.6%
1p2fA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 47.0 4.11e-01 84.7% 63.2%
3h5aD01 3.90.930.70 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.62 46.0 4.08e-01 100.0% 54.5%
1re0B02 1.10.1000.11 Mainly Alpha › Orthogonal Bundle › Arf Nucleotide-binding Site Opener; domain 2 › Arf Nucleotide-binding Site Opener,domain 2 0.62 53.0 4.33e-01 100.0% 87.0%
1xszA02 1.10.1000.11 Mainly Alpha › Orthogonal Bundle › Arf Nucleotide-binding Site Opener; domain 2 › Arf Nucleotide-binding Site Opener,domain 2 0.59 49.0 4.12e-01 100.0% 89.6%
3oymA01 1.10.340.70 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › 0.59 51.0 4.40e-01 98.3% 91.4%
3boqA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 49.0 3.82e-01 96.6% 48.1%
3kbbA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.58 45.0 4.34e-01 94.9% 75.7%
3cnhB02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.56 45.0 4.35e-01 94.9% 83.8%
2xv9A00 1.10.533.30 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Nematode polyprotein allergen ABA-1 0.55 47.0 3.67e-01 100.0% 46.3%
5a72A00 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.54 47.0 3.49e-01 100.0% 61.1%
1adeA02 1.10.300.10 Mainly Alpha › Orthogonal Bundle › Adenylosuccinate Synthetase, subunit A; domain 2 › Adenylosuccinate Synthetase, subunit A, domain 2 0.53 43.0 3.79e-01 98.3% 92.0%
7oq4Z01 1.20.120.950 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein DUF5062 0.51 37.0 3.30e-01 84.7% 77.6%
2abqA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.50 40.0 2.62e-01 93.2% 39.7%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3879117 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.80 63.0 6.54e-01 100.0% 92.7%
3973850 101.1.3.4 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.80 61.0 5.13e-01 84.7% 50.5%
3800931 101.1.1.70 ↗ alpha arrays › HTH › HTH › Three-helical HTH › SANT_DAMP1_like 0.79 58.0 5.32e-01 94.9% 61.3%
3184342 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.79 61.0 6.09e-01 96.6% 81.7%
3925094 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.78 59.0 6.08e-01 89.8% 87.3%
3908865 101.1.2.536 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc3_2 0.77 61.0 6.30e-01 98.3% 92.7%
3236978 101.1.1.70 ↗ alpha arrays › HTH › HTH › Three-helical HTH › SANT_DAMP1_like 0.77 58.0 4.63e-01 94.9% 40.8%
3313889 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.76 58.0 6.21e-01 96.6% 98.0%
3289886 101.1.3.4 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.76 59.0 4.80e-01 84.7% 46.7%
3925766 101.1.1.103 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF4817 0.75 59.0 5.49e-01 96.6% 68.0%
3893171 101.1.1.12 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc3_2 0.75 60.0 6.00e-01 100.0% 86.7%
3289370 101.1.1.300 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_30 0.75 59.0 4.89e-01 98.3% 50.0%
4113660 101.1.2.536 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc3_2 0.74 57.0 6.16e-01 94.9% 98.0%
3730705 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.74 56.0 6.02e-01 96.6% 98.0%
3804008 101.1.1.3 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding 0.74 55.0 5.82e-01 96.6% 94.0%
3403406 101.1.1.103 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF4817 0.74 56.0 5.99e-01 96.6% 98.0%
3992048 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.74 58.0 5.98e-01 96.6% 92.7%
3940696 101.1.1.103 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF4817 0.73 57.0 6.12e-01 100.0% 100.0%
3224537 101.1.1.12 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc3_2 0.73 56.0 5.96e-01 94.9% 98.0%
3704050 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.72 53.0 5.63e-01 91.5% 92.0%
3930423 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.72 60.0 6.04e-01 100.0% 91.7%
4061279 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.72 59.0 6.10e-01 100.0% 98.2%
3933926 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.72 58.0 5.62e-01 100.0% 81.5%
3929147 101.1.1.103 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF4817 0.70 53.0 5.47e-01 96.6% 89.1%
5006610 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.70 52.0 5.25e-01 100.0% 81.7%
3509559 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.69 62.0 4.71e-01 100.0% 51.9%
5070167 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.69 53.0 5.52e-01 100.0% 90.9%
3217577 101.1.1.75 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 0.69 56.0 5.63e-01 96.6% 90.0%
3618803 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.69 52.0 5.22e-01 93.2% 81.7%
3937317 101.1.1.75 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 0.69 52.0 5.56e-01 96.6% 100.0%
3495667 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.68 60.0 4.98e-01 100.0% 58.1%
4117405 101.1.1.228 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Eaf7 0.68 59.0 5.95e-01 100.0% 96.7%
3174958 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.67 55.0 5.67e-01 100.0% 98.2%
5053360 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.67 56.0 5.02e-01 94.9% 87.1%
3433531 101.1.10.1 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.66 56.0 4.27e-01 96.6% 47.1%
3935045 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.65 57.0 5.46e-01 100.0% 85.7%
3520185 101.1.2.518 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_DNAJC9 0.65 55.0 5.12e-01 100.0% 76.0%
4952347 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.65 54.0 4.84e-01 94.9% 98.8%
4983508 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 50.0 4.79e-01 89.8% 88.6%
5046694 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 47.0 4.87e-01 94.9% 92.7%
4931927 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 53.0 4.62e-01 100.0% 68.4%
3642968 108.1.1.4 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.61 50.0 4.49e-01 96.6% 84.4%
4031245 2006.1.1.18 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.61 52.0 3.56e-01 100.0% 38.3%
3815745 592.6.1.1 ↗ alpha arrays › PWI domain-like › Pre-mRNA-splicing helicase BRR2 plug domain › Pre-mRNA-splicing helicase BRR2 plug domain › BRR2_plug 0.60 49.0 4.58e-01 98.3% 80.0%
3818278 168.1.1.1 ↗ alpha arrays › Sec7 domain › Sec7 domain › Sec7 domain › Sec7 0.59 49.0 3.30e-01 98.3% 30.2%
3708254 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.58 46.0 4.66e-01 98.3% 91.7%
4928739 2007.2.3.11 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › PTP-SAK 0.57 45.0 3.36e-01 91.5% 86.7%
3683527 2006.1.1.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.57 49.0 3.13e-01 98.3% 77.3%
3886901 2007.2.3.11 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › PTP-SAK 0.53 44.0 3.44e-01 100.0% 57.2%
3885759 2007.2.3.11 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › PTP-SAK 0.53 44.0 3.43e-01 100.0% 57.2%
4379615 181.1.1.1 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N 0.52 38.0 3.65e-01 93.2% 65.7%