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AGM11803.1
Arc-VirKC292028__AGM11803.1__HCTV2-32__00032
Identity
- Accession:
- KC292028 ↗
- Protein ID:
- AGM11803.1 ↗
- Kingdom:
- archaea
Quality
58.8
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Saparoviridae›
Samsavirus›
Haloarcula_californiae_tailed_virus_2
TaxID: 1273747
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 19-79
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ermB00 | 1.10.10.710 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PSPTO_1197 like | 0.53 | 36.0 | 3.65e-01 | 82.0% | 68.8% |
| 3fbzA01 | 1.20.58.800 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 40.0 | 3.54e-01 | 95.1% | 72.5% |
| 3d8lA00 | 1.10.8.940 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein, phage p2 ORF12 | 0.50 | 40.0 | 3.63e-01 | 95.1% | 72.5% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3741993 | 131.2.1.0 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like | 0.67 | 53.0 | 3.36e-01 | 100.0% | 16.9% |
| 3210486 | 3932.1.1.5 ↗ | alpha bundles › CRISPR/Cas system-associated protein Csm6 6H domain › CRISPR/Cas system-associated protein Csm6 6H domain › CRISPR/Cas system-associated protein Csm6 6H domain › GATA_AreA | 0.57 | 45.0 | 4.32e-01 | 93.4% | 86.7% |
| 4173716 | 102.1.1.6 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › Methyltransf_5 | 0.55 | 47.0 | 4.03e-01 | 96.7% | 68.0% |
| 3917245 | 632.6.1.6 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit › Med15_M | 0.53 | 36.0 | 3.48e-01 | 70.5% | 91.4% |
D2
medium
residues 80-114_147-265
Domain cluster:
rep: IMGVR_UViG_3300026311_000146-3300026311-Ga0209723_100647318__D183-300
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF14550.12 best | Peptidase_S78_2 | 82.4 | 4.00e-23 | 81.2% | 92.4% |
D3
medium
residues 471-533