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AGM11867.1

Arc-Vir

KC292029__AGM11867.1__DNAM5-4__00004

Identity

Accession:
KC292029 ↗
Protein ID:
AGM11867.1 ↗
Kingdom:
archaea

Quality

93.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-79
PDB
Domain cluster: representative
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4rngC00 1.20.1280.290 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.88 82.0 7.72e-01 100.0% 91.6%
2yxyA01 1.10.287.880 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Hypothetical protein YfhH domain 0.87 56.0 6.63e-01 77.5% 94.0%
4qndA00 1.20.1280.290 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.85 78.0 7.00e-01 100.0% 80.4%
3nymA00 6.10.290.10 Special › Helix non-globular › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.83 57.0 4.61e-01 70.4% 49.2%
2yxhA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.83 63.0 5.28e-01 78.9% 54.0%
4x5mA00 1.20.1280.290 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.83 75.0 7.01e-01 100.0% 88.4%
3craB01 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.77 58.0 5.47e-01 80.3% 67.4%
3uo2B02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.76 62.0 5.89e-01 88.7% 84.5%
2gs4A00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.75 61.0 4.58e-01 85.9% 82.3%
2g38B00 1.20.1260.20 Mainly Alpha › Up-down Bundle › Ferritin › PPE superfamily 0.74 54.0 3.94e-01 76.1% 58.4%
8sbeA01 1.20.1250.20 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains 0.74 57.0 4.10e-01 83.1% 32.7%
3o7pA01 1.20.1250.20 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains 0.73 58.0 4.04e-01 84.5% 31.7%
3anwA01 1.20.58.1030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.73 58.0 4.93e-01 84.5% 61.1%
2p06B00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.72 59.0 5.52e-01 88.7% 76.1%
5jc3A02 1.20.1320.30 Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › 0.67 54.0 4.38e-01 84.5% 48.4%
1fpoC02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.67 60.0 5.54e-01 100.0% 92.3%
2chpA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.67 60.0 4.59e-01 95.8% 91.2%
5nl6A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 59.0 5.16e-01 100.0% 85.2%
1u5pA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 57.0 5.05e-01 100.0% 88.0%
2qgmA03 1.20.1440.30 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Biosynthetic Protein domain 0.66 57.0 4.87e-01 95.8% 74.1%
1oq4A00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.66 60.0 3.78e-01 100.0% 44.8%
5nl6B01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.65 57.0 4.81e-01 100.0% 82.6%
2mtqA00 1.20.58.130 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.65 55.0 5.50e-01 98.6% 97.3%
2f3oA00 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.65 54.0 3.02e-01 88.7% 22.1%
3anwB00 1.20.58.2050 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 53.0 4.17e-01 95.8% 44.4%
3edvB01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 55.0 4.52e-01 100.0% 70.6%
3dyjA02 1.20.1420.10 Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain 0.63 54.0 4.30e-01 98.6% 63.6%
1hciA03 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.62 52.0 4.53e-01 100.0% 84.2%
2x0cA01 1.20.1420.10 Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain 0.62 54.0 4.14e-01 100.0% 49.4%
1r3dA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.61 50.0 3.53e-01 95.8% 65.4%
2e9xA01 1.20.58.1030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 52.0 4.30e-01 95.8% 67.2%
4cqiA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 54.0 4.68e-01 100.0% 99.1%
4fm3A00 1.20.1270.390 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.59 55.0 4.91e-01 100.0% 73.7%
2e9xD01 1.20.58.1030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 45.0 3.79e-01 90.1% 48.9%
1rqgA04 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.56 47.0 3.82e-01 97.2% 56.3%
2bvlA01 1.20.58.1190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 47.0 4.46e-01 97.2% 94.2%
2hroA02 1.10.274.10 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › PtsI, HPr-binding domain 0.55 43.0 3.61e-01 88.7% 53.9%
1cnt200 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.54 43.0 3.63e-01 90.1% 55.4%
1o2dA02 1.20.1090.10 Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain 0.54 44.0 3.46e-01 98.6% 63.7%
1zkrB00 1.20.920.50 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › 0.54 38.0 3.04e-01 74.6% 71.0%
1zvzA02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.53 46.0 3.92e-01 100.0% 63.7%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5034342 6155.1.1.0 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter 0.91 86.0 8.21e-01 100.0% 95.0%
4929003 6155.1.1.2 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop 0.89 83.0 7.58e-01 100.0% 85.6%
1411677 6155.1.1.2 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop 0.88 82.0 7.72e-01 100.0% 91.6%
5019543 6155.1.1.2 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop 0.88 80.0 7.03e-01 98.6% 75.0%
5055868 6155.1.1.2 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop 0.88 79.0 7.75e-01 97.2% 98.7%
5013782 6155.1.1.0 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter 0.87 80.0 7.83e-01 98.6% 98.7%
5004033 6155.1.1.1 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv 0.87 78.0 7.20e-01 98.6% 83.3%
3264733 6155.1.1.1 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv 0.85 78.0 7.03e-01 100.0% 84.2%
1388514 6155.1.1.0 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter 0.85 78.0 7.00e-01 100.0% 80.4%
3989360 6155.1.1.0 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter 0.85 77.0 6.95e-01 98.6% 94.7%
5043430 6155.1.1.0 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter 0.85 74.0 7.27e-01 94.4% 94.7%
5029393 6155.1.1.0 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter 0.84 76.0 7.04e-01 100.0% 85.4%
4200933 6155.1.1.1 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv 0.84 75.0 6.83e-01 100.0% 80.0%
3932372 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.83 58.0 4.51e-01 71.8% 71.4%
3256234 6155.1.1.1 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv 0.83 74.0 7.03e-01 100.0% 89.4%
3256571 6155.1.1.1 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv 0.83 75.0 6.76e-01 100.0% 80.0%
1713334 6155.1.1.1 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv 0.83 74.0 6.27e-01 100.0% 65.0%
3244940 6155.1.1.0 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter 0.82 75.0 6.90e-01 100.0% 88.9%
4959463 6155.1.1.2 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop 0.82 75.0 7.21e-01 100.0% 96.2%
4002622 6155.1.1.1 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv 0.82 74.0 6.49e-01 100.0% 76.2%
1490311 6155.1.1.2 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop 0.82 73.0 6.81e-01 100.0% 85.4%
3210969 6155.1.1.1 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv 0.81 72.0 6.58e-01 100.0% 80.0%
3983391 6155.2.1.1 alpha duplicates or obligate multimers › TOG superfamily › PnuC › PnuC › NMN_transporter 0.81 74.0 5.12e-01 100.0% 93.6%
3436288 6155.1.1.1 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv 0.80 71.0 5.85e-01 100.0% 58.5%
3508737 6155.1.1.1 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv 0.80 72.0 6.30e-01 100.0% 88.6%
3739669 604.13.1.0 alpha bundles › Spectrin repeat-like › USP8 N-terminal domain-like › USP8 N-terminal domain-like 0.79 61.0 5.30e-01 93.0% 55.2%
3995181 5050.1.1.0 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.79 62.0 4.70e-01 83.1% 41.3%
3924740 622.1.1.1 alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain › HSCB_C 0.78 68.0 6.42e-01 94.4% 88.2%
4046023 622.1.1.1 alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain › HSCB_C 0.78 65.0 5.97e-01 90.1% 81.1%
3620592 6155.1.1.15 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › DUF846 0.78 69.0 5.49e-01 98.6% 77.9%
4027582 603.1.1.120 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › DUF846 0.77 68.0 5.73e-01 98.6% 69.2%
3415759 622.1.1.1 alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain › HSCB_C 0.77 64.0 6.06e-01 90.1% 85.9%
3615028 622.1.1.1 alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain › HSCB_C 0.76 67.0 5.68e-01 94.4% 72.7%
5040942 150.1.1.7 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › DUF892 0.75 61.0 4.65e-01 85.9% 86.0%
1261672 622.1.1.1 alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain › HSCB_C 0.75 64.0 5.86e-01 93.0% 81.5%
3791287 6155.1.1.1 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv 0.75 66.0 6.14e-01 100.0% 88.9%
3951074 109.3.1.160 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › EccD 0.73 64.0 4.18e-01 100.0% 24.3%
4140820 3684.1.1.0 alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like 0.73 56.0 4.54e-01 80.3% 71.2%
3590073 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.73 55.0 5.22e-01 80.3% 75.3%
4262515 610.4.1.1 alpha arrays › ERP29 C domain-like › YqeY domain › YqeY domain › YqeY 0.73 61.0 5.37e-01 88.7% 76.0%
3178110 610.4.1.1 alpha arrays › ERP29 C domain-like › YqeY domain › YqeY domain › YqeY 0.73 61.0 4.51e-01 88.7% 46.1%
4030604 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.72 63.0 4.70e-01 100.0% 68.1%
3386043 610.4.1.1 alpha arrays › ERP29 C domain-like › YqeY domain › YqeY domain › YqeY 0.72 58.0 4.49e-01 85.9% 51.0%
3831449 633.4.1.1 alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI 0.71 53.0 4.04e-01 78.9% 84.4%
3543876 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.68 58.0 5.12e-01 100.0% 86.4%
4074824 604.12.1.1 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.67 62.0 5.42e-01 98.6% 72.0%
3584465 5050.1.1.0 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.67 60.0 4.87e-01 98.6% 63.1%
3610231 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.67 59.0 4.93e-01 97.2% 59.2%
5066060 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.66 56.0 4.13e-01 94.4% 36.8%
3841645 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.66 57.0 5.18e-01 100.0% 87.0%
3917090 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.65 55.0 4.61e-01 100.0% 70.4%
3504301 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.65 56.0 4.92e-01 100.0% 88.2%
3920747 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.64 55.0 4.03e-01 100.0% 45.9%
3476610 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.63 55.0 4.58e-01 100.0% 77.7%
5069039 3877.1.1.0 alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC 0.62 50.0 3.98e-01 88.7% 87.4%
3389599 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.61 53.0 4.53e-01 100.0% 78.3%
5045166 601.7.1.0 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.61 57.0 4.72e-01 98.6% 74.8%
4994749 150.1.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.60 55.0 4.72e-01 100.0% 76.4%
3218641 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.60 50.0 4.29e-01 95.8% 81.7%
5030078 7516.1.1.2 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.57 47.0 3.27e-01 98.6% 53.2%
3878135 601.1.1.7 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › Talin_IBS2B 0.57 49.0 3.87e-01 100.0% 64.4%
5033039 632.11.1.1 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like › DUF357 0.54 49.0 4.89e-01 100.0% 97.3%
3467187 601.1.1.139 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › DUF7880 0.51 44.0 3.84e-01 100.0% 79.1%
4948274 164.1.1.1 alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 0.50 42.0 4.18e-01 94.4% 94.7%