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KC310802.1__AGK86513.1__S-CBP1_0007__00007
Bact-VirKC310802.1__AGK86513.1__S-CBP1_0007__00007
Identity
- Accession:
- KC310802 ↗
- Kingdom:
- phage
Quality
90.1
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Autographivirales›
Angmobvirus›
Synechococcus_phage_S-CBP1
TaxID: 1273711
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-51
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1s5jA04 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.78 | 50.0 | 4.60e-01 | 72.9% | 52.5% |
| 3ig5A04 | 1.10.8.960 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.77 | 61.0 | 5.41e-01 | 100.0% | 62.1% |
| 4yt2A02 | 1.20.120.1300 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hmd, C-terminal helical subdomain | 0.74 | 61.0 | 4.86e-01 | 97.9% | 46.2% |
| 1t33A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.71 | 61.0 | 4.29e-01 | 100.0% | 32.9% |
| 2gtsA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.70 | 49.0 | 4.15e-01 | 72.9% | 50.6% |
| 4wv4B00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.70 | 58.0 | 4.68e-01 | 93.8% | 51.6% |
| 6ircA01 | 1.20.1230.10 | Mainly Alpha › Up-down Bundle › Phospholipase C Beta; Chain: A › Phospholipase C beta, distal C-terminal domain | 0.69 | 60.0 | 3.99e-01 | 100.0% | 36.9% |
| 1vkcA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.68 | 54.0 | 4.04e-01 | 100.0% | 33.1% |
| 3besR03 | 6.10.140.1480 | Special › Helix non-globular › Helix Hairpins › | 0.68 | 54.0 | 5.22e-01 | 97.9% | 80.4% |
| 3ff5A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 48.0 | 4.73e-01 | 79.2% | 72.2% |
| 6j09A02 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.67 | 56.0 | 4.78e-01 | 93.8% | 57.7% |
| 1rq0A01 | 6.10.140.160 | Special › Helix non-globular › Helix Hairpins › | 0.66 | 50.0 | 4.13e-01 | 81.2% | 49.4% |
| 4o5fA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.65 | 52.0 | 3.81e-01 | 87.5% | 79.5% |
| 3i2fA02 | 1.10.3020.10 | Mainly Alpha › Orthogonal Bundle › alpha-amino acid ester hydrolase ( Helical cap domain) › alpha-amino acid ester hydrolase ( Helical cap domain) | 0.65 | 55.0 | 4.50e-01 | 100.0% | 74.7% |
| 1s8nA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 48.0 | 4.63e-01 | 85.4% | 79.3% |
| 2qdfA03 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.63 | 51.0 | 4.34e-01 | 89.6% | 87.0% |
| 1iufA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.60 | 42.0 | 3.72e-01 | 77.1% | 50.6% |
| 4my0C01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.60 | 46.0 | 3.41e-01 | 89.6% | 70.6% |
| 3fixA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.60 | 48.0 | 3.47e-01 | 100.0% | 28.5% |
| 2oq1A02 | 1.10.930.10 | Mainly Alpha › Orthogonal Bundle › Syk Kinase; Chain A, domain 2 › Syk Kinase; Chain A, domain 2 | 0.59 | 42.0 | 4.29e-01 | 81.2% | 86.7% |
| 2aj6A00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.57 | 47.0 | 3.64e-01 | 97.9% | 39.2% |
| 5uayA02 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.55 | 42.0 | 3.58e-01 | 89.6% | 48.2% |
| 4kh7B02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.55 | 41.0 | 3.08e-01 | 81.2% | 33.1% |
| 2f2uB01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.54 | 37.0 | 2.63e-01 | 77.1% | 72.3% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3239423 | 190.1.1.0 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box | 0.75 | 55.0 | 5.66e-01 | 91.7% | 84.4% |
| 3235225 | 4177.1.1.5 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › Vps5 | 0.69 | 55.0 | 3.48e-01 | 85.4% | 81.8% |
| 4535381 | 101.1.2.603 ↗ | alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82, HTH_9 | 0.69 | 58.0 | 3.83e-01 | 100.0% | 61.3% |
| 3819498 | 143.1.1.0 ↗ | alpha arrays › PABP domain-like › PABC(PABP) domain › PABC(PABP) domain | 0.68 | 55.0 | 5.04e-01 | 91.7% | 70.8% |
| 5079705 | 304.103.1.1 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like › Nitroreductase | 0.67 | 55.0 | 3.75e-01 | 100.0% | 64.5% |
| 4979114 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.64 | 50.0 | 3.80e-01 | 89.6% | 96.0% |
| 3927154 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.64 | 54.0 | 4.82e-01 | 95.8% | 65.7% |
| 3501427 | 3755.3.1.295 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › WWC1 | 0.59 | 52.0 | 3.66e-01 | 97.9% | 95.2% |