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KC310802.1__AGK86542.1__S-CBP1_0037__00036

Bact-Vir

KC310802.1__AGK86542.1__S-CBP1_0037__00036

Identity

Accession:
KC310802 ↗
Kingdom:
phage

Quality

80.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Angmobvirus› Synechococcus_phage_S-CBP1

TaxID: 1273711

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 278-352
PDB
Domain cluster: representative
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3kvpA00 6.20.140.10 Special › Other non-globular › Immunoglobulin-like › 0.75 39.0 5.01e-01 85.3% 88.4%
6o38A02 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.74 61.0 5.66e-01 88.0% 81.5%
6o38A01 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.72 58.0 5.37e-01 85.3% 80.4%
1krlA00 6.20.50.130 Special › Other non-globular › N-terminal domain of TfIIb › 0.70 36.0 4.49e-01 70.7% 84.1%
1wmiA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.67 40.0 3.79e-01 85.3% 51.1%
4gnxA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 53.0 4.74e-01 94.7% 75.0%
3mxnA01 2.40.50.510 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.62 50.0 4.95e-01 88.0% 86.3%
2q7dA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.61 42.0 3.05e-01 70.7% 51.0%
7pupA01 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.60 41.0 2.96e-01 70.7% 46.5%
2otrA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.59 38.0 3.57e-01 85.3% 54.4%
6tnyB02 2.40.50.430 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 50.0 4.44e-01 98.7% 81.2%
1byfA00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.58 48.0 4.11e-01 92.0% 82.1%
3g5oC00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.58 37.0 3.50e-01 82.7% 55.2%
3mxnB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 48.0 4.09e-01 94.7% 81.7%
3fjyA02 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.58 47.0 3.73e-01 93.3% 74.4%
2kc8A00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.57 40.0 3.72e-01 82.7% 57.9%
7arcC01 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.57 38.0 3.26e-01 70.7% 77.8%
2gq1A01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.55 42.0 3.17e-01 81.3% 88.2%
1dbzA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.54 41.0 3.05e-01 81.3% 89.1%
3qjhA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 38.0 3.45e-01 74.7% 71.0%
3bgaA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 41.0 3.07e-01 86.7% 68.9%
2kxgA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 42.0 3.91e-01 86.7% 87.4%
5c5cA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.52 47.0 3.64e-01 100.0% 82.3%
2kheA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.52 36.0 3.45e-01 82.7% 61.8%
3gwrB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 36.0 3.13e-01 74.7% 96.1%
3szeA01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.51 43.0 2.95e-01 98.7% 78.6%
4q52A00 2.60.40.3910 Mainly Beta › Sandwich › Immunoglobulin-like › Inclusion body protein 0.51 38.0 2.97e-01 80.0% 81.1%
4hwnA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 35.0 3.40e-01 73.3% 63.5%
4k6lG00 3.90.210.10 Alpha Beta › Alpha-Beta Complex › Heat-Labile Enterotoxin; Chain A › Heat-Labile Enterotoxin, subunit A 0.51 41.0 2.96e-01 89.3% 63.4%
4k08A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 43.0 3.48e-01 93.3% 93.8%
3dsmA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 41.0 2.67e-01 88.0% 26.9%
1lkfA00 2.70.240.10 Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA 0.50 42.0 2.79e-01 90.7% 68.2%
2owpA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 36.0 3.08e-01 76.0% 89.9%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2581338 520.2.1.1 ↗ beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich 0.75 62.0 5.71e-01 89.3% 79.2%
2581337 520.2.1.1 ↗ beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich 0.72 58.0 5.35e-01 85.3% 79.6%
3739833 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 57.0 5.04e-01 90.7% 90.9%
4396885 301.13.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain › DegV 0.68 46.0 3.83e-01 70.7% 39.3%
3699623 2.1.1.43 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_3 0.68 57.0 5.15e-01 94.7% 79.0%
3622421 2.1.1.217 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_DEPS-1_3rd 0.64 44.0 4.55e-01 72.0% 91.4%
3995470 2.1.1.217 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_DEPS-1_3rd 0.63 43.0 4.44e-01 70.7% 92.9%
3395219 4312.2.1.1 ↗ a+b two layers › RelE-like › YaeB-like › YaeB-like › TrmO_C 0.63 40.0 4.08e-01 81.3% 65.3%
3235891 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 42.0 4.22e-01 70.7% 89.3%
4887373 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.62 39.0 3.82e-01 82.7% 60.8%
3252371 206.1.3.16 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Ins134_P3_kin 0.61 42.0 2.96e-01 70.7% 45.5%
5059431 2.1.1.24 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CcmE 0.60 47.0 4.56e-01 86.7% 100.0%
3460641 206.1.3.16 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Ins134_P3_kin 0.60 41.0 2.86e-01 70.7% 45.1%
3845979 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 51.0 4.39e-01 97.3% 79.2%
4271190 2.1.1.24 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CcmE 0.60 52.0 4.29e-01 100.0% 69.3%
3701513 2485.1.1.1 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.59 47.0 3.93e-01 86.7% 74.6%
4025163 2.1.1.224 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF29084 0.59 50.0 4.23e-01 96.0% 75.4%
3908392 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 47.0 4.15e-01 90.7% 80.9%
4941220 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.58 37.0 3.65e-01 82.7% 61.3%
3549675 2007.1.2.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.58 53.0 3.86e-01 100.0% 81.0%
5029836 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.58 36.0 3.60e-01 82.7% 60.0%
5071213 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.58 38.0 3.74e-01 81.3% 63.7%
5005256 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.57 38.0 3.65e-01 82.7% 60.0%
134040 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.57 40.0 3.72e-01 82.7% 57.9%
2060430 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.56 38.0 3.74e-01 81.3% 65.8%
4158189 2004.1.1.55 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RNA_helicase 0.56 48.0 3.71e-01 92.0% 91.9%
4162388 2.1.1.224 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF29084 0.56 48.0 4.03e-01 96.0% 66.9%
3376913 2.1.1.28 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › mRNA_cap_C 0.56 46.0 4.06e-01 92.0% 60.9%
5018720 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.56 36.0 3.50e-01 82.7% 58.8%
3403473 5.1.4.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.55 42.0 2.67e-01 81.3% 28.9%
3604507 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.54 36.0 3.35e-01 82.7% 54.3%
4994192 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.54 37.0 3.62e-01 82.7% 65.0%
3602698 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.54 38.0 3.66e-01 82.7% 64.7%
None — 0.54 48.0 3.04e-01 100.0% 72.7%
3791149 5.1.3.4 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › WD40 0.53 42.0 2.66e-01 84.0% 26.9%
5027871 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.53 35.0 3.25e-01 81.3% 54.8%
3518602 2007.1.2.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.52 47.0 3.56e-01 100.0% 77.8%
3483569 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 39.0 2.47e-01 82.7% 24.4%
3739345 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 44.0 3.29e-01 93.3% 57.8%
3333457 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.51 41.0 2.79e-01 85.3% 47.2%
D2 high residues 1077-1168
PDB
Domain cluster: rep: MW073017.1__QPB08539.1__X__00060__D1038-1127
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13884.12 best Peptidase_S74 22.4 1.70e-04 46.7% 75.9%
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2mkyA00 3.30.70.1530 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 0.62 21.0 2.68e-01 75.0% 44.8%
3r0aA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 49.0 4.57e-01 90.2% 83.3%
3f42A00 3.30.1310.10 Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › Nucleoid-associated protein YbaB-like domain 0.60 39.0 3.91e-01 100.0% 65.6%
6ko5A02 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.54 45.0 3.25e-01 94.6% 85.3%
4n4nB00 3.90.640.100 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › 0.53 31.0 3.77e-01 81.5% 96.4%
1ykdB01 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.52 45.0 3.61e-01 97.8% 86.5%
2zdiC00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.51 44.0 3.80e-01 95.7% 64.9%
2zdiB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.50 43.0 4.15e-01 96.7% 81.1%
4lq0A02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.50 38.0 3.33e-01 82.6% 61.9%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3252576 3240.1.1.1 ↗ alpha arrays › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Peptidase_S74 0.86 82.0 6.84e-01 100.0% 72.4%
3563383 3240.1.1.2 ↗ alpha arrays › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Peptidase_S74,MYRF_ICA 0.85 81.0 6.62e-01 100.0% 66.5%
3225281 3240.1.1.2 ↗ alpha arrays › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Peptidase_S74,MYRF_ICA 0.83 80.0 6.57e-01 100.0% 62.7%
3944436 3240.1.1.1 ↗ alpha arrays › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Peptidase_S74 0.81 76.0 7.11e-01 100.0% 83.6%
3618364 3240.1.1.1 ↗ alpha arrays › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Peptidase_S74 0.80 63.0 5.81e-01 82.6% 67.0%
3275547 3240.1.1.1 ↗ alpha arrays › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Peptidase_S74 0.79 60.0 5.57e-01 78.3% 81.8%
5065235 101.1.2.738 ↗ alpha arrays › HTH › HTH › winged helix domain › Vir_act_alpha_C 0.55 44.0 3.44e-01 83.7% 96.2%
4951916 2.9.1.1 ↗ beta barrels › OB-fold › RNB domain-like › RNB domain-like › RNB 0.53 48.0 3.11e-01 100.0% 95.5%
3964741 101.1.2.368 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_36 0.52 42.0 4.13e-01 89.1% 95.0%
4451175 4019.1.1.1 ↗ alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase 0.51 38.0 2.96e-01 78.3% 53.7%
3486523 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.51 42.0 4.31e-01 91.3% 90.0%
4047911 101.1.2.231 ↗ alpha arrays › HTH › HTH › winged helix domain › Staph_reg_Sar_Rot 0.50 43.0 3.92e-01 97.8% 73.8%
5075418 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.50 29.0 3.25e-01 73.9% 76.9%
D3 medium residues 1-76
PDB
Domain cluster: rep: NC_027397.1__YP_009153046.1__ACQ41_gp20__00020__D9-117
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03906.21 best Phage_T7_tail 46.5 5.10e-12 100.0% 57.6%
D4 medium residues 77-214
PDB
Domain cluster: representative
D5 medium residues 393-451
PDB
Domain cluster: rep: OP053362.1__UYE97273.1__X__00108__D357-406
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2x3hA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.66 47.0 2.77e-01 100.0% 9.0%
2o5nA02 3.30.500.30 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.66 51.0 3.70e-01 83.1% 69.4%
2qzbA00 2.60.460.10 Mainly Beta › Sandwich › protein yfey like fold › protein yfey like domain 0.66 46.0 3.40e-01 72.9% 77.2%
4g59C02 3.30.500.30 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.64 48.0 3.55e-01 83.1% 69.0%
1cm0A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.63 43.0 3.12e-01 71.2% 74.7%
4g7nA02 3.30.1120.130 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.62 43.0 3.73e-01 88.1% 45.4%
4h0oA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.61 42.0 2.99e-01 71.2% 25.3%
2p3nA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.61 49.0 3.79e-01 88.1% 54.8%
2od0A00 3.30.1460.30 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › YgaC/TfoX-N like chaperone 0.61 42.0 3.52e-01 72.9% 78.6%
4ruvA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.59 41.0 3.41e-01 74.6% 84.0%
1xebA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.57 41.0 3.04e-01 76.3% 78.5%
3jvgA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.56 47.0 3.38e-01 93.2% 76.3%
2pr1A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.56 40.0 3.00e-01 76.3% 76.3%
1k8iB01 3.10.320.10 Alpha Beta › Roll › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 0.55 40.0 3.54e-01 79.7% 56.0%
3u97A00 3.10.450.530 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Ribonuclease toxin, BrnT, of type II toxin-antitoxin system 0.55 37.0 3.46e-01 71.2% 64.9%
3r90A00 3.10.400.20 Alpha Beta › Roll › Sulfate adenylyltransferase › 0.55 46.0 3.30e-01 94.9% 84.3%
4fbcA01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.55 46.0 3.41e-01 100.0% 56.9%
3dbxA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.54 47.0 3.37e-01 100.0% 71.1%
1zs8A01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.53 45.0 3.29e-01 96.6% 77.8%
2ej9A01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.53 36.0 2.61e-01 72.9% 25.5%
3facA00 2.170.150.70 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › 0.53 40.0 3.30e-01 84.7% 45.0%
3it8D01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.53 45.0 3.28e-01 100.0% 72.2%
3owcB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 43.0 3.24e-01 100.0% 92.4%
2jmbA00 2.40.128.290 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein family Atu4866 0.52 39.0 3.65e-01 94.9% 63.3%
3tg9A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.52 44.0 2.76e-01 94.9% 64.0%
2wm1A00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.51 39.0 2.46e-01 83.1% 85.2%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4928895 79.1.1.0 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain 0.86 63.0 4.00e-01 100.0% 17.2%
3980770 79.1.1.0 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain 0.75 58.0 4.10e-01 81.4% 32.1%
4025709 79.1.1.0 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain 0.69 55.0 5.31e-01 100.0% 78.5%
5025174 243.6.1.0 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.66 40.0 3.85e-01 72.9% 51.4%
3582902 5.1.10.4 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed › SSL_N 0.66 43.0 3.37e-01 88.1% 31.2%
3899940 331.4.1.9 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › CPSF73-100_C 0.66 40.0 3.66e-01 86.4% 45.0%
3961944 241.7.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › YgaC/TfoX-N like › YgaC/TfoX-N like › TfoX_N 0.65 47.0 4.01e-01 78.0% 85.0%
1162187 233.1.1.8 ↗ a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › M157_N_1 0.64 48.0 3.45e-01 83.1% 61.6%
4996528 243.6.1.0 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.63 39.0 4.19e-01 74.6% 74.0%
3280585 241.11.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like › YjbR 0.63 47.0 3.82e-01 79.7% 63.6%
3722666 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 36.0 4.04e-01 83.1% 77.8%
4976671 243.6.1.0 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.60 40.0 3.82e-01 81.4% 58.6%
3211211 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.59 41.0 3.03e-01 72.9% 75.5%
4934918 331.2.1.0 ↗ a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain 0.59 41.0 3.87e-01 76.3% 61.4%
5045830 243.6.1.9 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › TGT_C2 0.59 39.0 3.70e-01 83.1% 57.1%
4386761 292.2.1.3 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › Plk4_PB2 0.58 43.0 3.64e-01 88.1% 47.0%
4548121 243.6.1.9 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › TGT_C2 0.57 35.0 3.39e-01 81.4% 51.4%
5075886 243.6.1.1 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 0.57 46.0 4.35e-01 88.1% 91.4%
4953037 243.6.1.9 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › TGT_C2 0.57 36.0 3.40e-01 83.1% 50.7%
4946134 243.6.1.0 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.56 37.0 3.61e-01 72.9% 60.0%
3645770 292.1.1.1 ↗ a+b two layers › RIP/Polo-box domain › Ribosome inactivating proteins (RIP) › Ribosome inactivating proteins (RIP) › RIP 0.56 48.0 3.12e-01 100.0% 37.6%
4987739 2003.1.5.13 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.56 49.0 3.30e-01 100.0% 67.2%
3681883 292.1.1.1 ↗ a+b two layers › RIP/Polo-box domain › Ribosome inactivating proteins (RIP) › Ribosome inactivating proteins (RIP) › RIP 0.56 47.0 3.11e-01 100.0% 37.1%
3661719 292.1.1.1 ↗ a+b two layers › RIP/Polo-box domain › Ribosome inactivating proteins (RIP) › Ribosome inactivating proteins (RIP) › RIP 0.55 46.0 3.11e-01 100.0% 40.8%
5049994 243.6.1.4 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › Pre-PUA 0.55 44.0 4.11e-01 88.1% 92.0%
3301044 12.3.1.3 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Aldose_epim 0.55 46.0 3.26e-01 100.0% 92.2%
4978884 243.6.1.0 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.55 44.0 4.06e-01 88.1% 94.7%
4946183 243.6.1.12 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › PUA 0.54 44.0 4.06e-01 88.1% 92.0%
3438481 292.1.1.1 ↗ a+b two layers › RIP/Polo-box domain › Ribosome inactivating proteins (RIP) › Ribosome inactivating proteins (RIP) › RIP 0.54 41.0 2.85e-01 83.1% 28.9%
5047980 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.54 45.0 2.95e-01 100.0% 81.9%
3713384 844.1.1.0 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.54 42.0 3.02e-01 86.4% 48.0%
3440495 292.1.1.1 ↗ a+b two layers › RIP/Polo-box domain › Ribosome inactivating proteins (RIP) › Ribosome inactivating proteins (RIP) › RIP 0.53 44.0 2.98e-01 93.2% 36.2%
142988 243.6.1.4 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › Pre-PUA 0.52 46.0 3.99e-01 100.0% 82.4%
3262209 243.6.1.4 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › Pre-PUA 0.52 45.0 3.93e-01 98.3% 87.8%
3164508 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.52 45.0 3.30e-01 100.0% 56.5%
4202859 2004.1.1.67 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CbiA 0.51 35.0 2.34e-01 72.9% 22.6%
3436989 292.1.1.1 ↗ a+b two layers › RIP/Polo-box domain › Ribosome inactivating proteins (RIP) › Ribosome inactivating proteins (RIP) › RIP 0.51 38.0 2.72e-01 84.7% 53.8%
5015435 2003.6.1.2 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › Carb_kinase 0.51 36.0 2.37e-01 72.9% 25.6%
3914899 11.1.1.852 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28276 0.51 39.0 3.08e-01 83.1% 45.6%
4952432 243.6.1.1 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 0.50 44.0 4.18e-01 100.0% 92.9%
D6 medium residues 751-827
PDB
Domain cluster: rep: OP053362.1__UYE97273.1__X__00108__D357-406
D7 medium residues 828-901
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wthA02 3.10.450.190 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 39.0 3.53e-01 87.8% 46.1%
4h0oA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.62 38.0 2.85e-01 70.3% 25.3%
4n81A01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.59 47.0 3.88e-01 86.5% 58.1%
2bjiA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.58 47.0 3.77e-01 87.8% 61.1%
3h5kA01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.57 46.0 3.52e-01 89.2% 67.2%
3lv0A01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.57 45.0 3.66e-01 85.1% 60.4%
2arhA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 44.0 3.46e-01 87.8% 80.4%
5khaB01 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.54 42.0 2.86e-01 83.8% 58.8%
2q74A01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.53 43.0 3.62e-01 89.2% 68.2%
4fbcA01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.53 43.0 3.31e-01 89.2% 59.8%
4d8pB01 3.10.320.10 Alpha Beta › Roll › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 0.53 41.0 3.68e-01 82.4% 64.7%
3dlaB01 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.53 43.0 2.87e-01 91.9% 91.0%
2w00A01 3.90.1570.50 Alpha Beta › Alpha-Beta Complex › tt1808, chain A › 0.53 42.0 3.34e-01 91.9% 79.5%
3rd6A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 37.0 3.07e-01 77.0% 56.2%
3gjyA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 42.0 2.90e-01 90.5% 64.5%
3sreA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.51 42.0 2.85e-01 97.3% 59.6%
1hyrC01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.51 45.0 3.34e-01 100.0% 40.0%
7zqiA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.50 42.0 3.16e-01 91.9% 58.4%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3895829 233.1.1.3 ↗ a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_II_alpha 0.71 42.0 3.83e-01 79.7% 45.3%
4976671 243.6.1.0 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.61 36.0 3.76e-01 78.4% 62.9%
4025709 79.1.1.0 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain 0.60 45.0 4.83e-01 98.6% 90.8%
3651990 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.55 41.0 4.54e-01 90.5% 100.0%
3479475 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.53 39.0 2.74e-01 78.4% 78.6%
4991451 213.1.1.17 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › DUF1122 0.53 41.0 3.43e-01 86.5% 88.6%
4681334 77.1.1.0 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein 0.52 44.0 3.06e-01 94.6% 53.7%
1279538 2003.1.5.13 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.52 42.0 2.90e-01 90.5% 64.5%
3782340 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.51 34.0 3.19e-01 78.4% 53.7%
3644145 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.51 41.0 2.69e-01 89.2% 34.9%