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KC310803.1__AGK86580.1__S-CBP3_0023__00024
Bact-VirKC310803.1__AGK86580.1__S-CBP3_0023__00024
Identity
- Accession:
- KC310803 ↗
- Kingdom:
- phage
Quality
87.2
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Autographivirales›
Lirvirus›
Synechococcus_phage_S-CBP3
TaxID: 756276
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-42
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2jveA00 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.70 | 58.0 | 4.99e-01 | 100.0% | 57.7% |
| 4ggmX02 | 3.40.140.80 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › LpxI C-terminal catalytic domain | 0.68 | 54.0 | 3.85e-01 | 100.0% | 31.3% |
| 3rbsA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.64 | 53.0 | 4.28e-01 | 100.0% | 50.0% |
| 2vvfA01 | 2.60.120.730 | Mainly Beta › Sandwich › Jelly Rolls › | 0.61 | 51.0 | 3.60e-01 | 100.0% | 52.5% |
| 3lcyA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 52.0 | 4.00e-01 | 100.0% | 46.5% |
| 2eo1A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 51.0 | 3.94e-01 | 100.0% | 45.1% |
| 2wp3O00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 52.0 | 4.00e-01 | 100.0% | 47.4% |
| 2v5tA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 51.0 | 4.00e-01 | 100.0% | 46.8% |
| 5tipA02 | 2.70.9.20 | Mainly Beta › Distorted Sandwich › Adenovirus Type 2 Hexon; domain 4 › Major capsid protein Vp54 | 0.60 | 50.0 | 3.21e-01 | 100.0% | 31.6% |
| 1t4aA00 | 3.30.1280.10 | Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS | 0.59 | 47.0 | 3.97e-01 | 97.6% | 100.0% |
| 3fdjA02 | 2.20.28.50 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › DegV, N-terminal domain, peripheral subdomain | 0.59 | 47.0 | 4.89e-01 | 100.0% | 100.0% |
| 3e56A00 | 6.20.180.10 | Special › Other non-globular › Ubiquitin-like (UB roll) › | 0.59 | 41.0 | 3.49e-01 | 75.6% | 44.0% |
| 1zczA02 | 3.40.140.20 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › AICAR transformylase, duplication domain | 0.59 | 45.0 | 3.51e-01 | 100.0% | 39.3% |
| 6cngA02 | 2.20.28.50 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › DegV, N-terminal domain, peripheral subdomain | 0.57 | 44.0 | 4.51e-01 | 100.0% | 100.0% |
| 3jr7A02 | 2.20.28.50 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › DegV, N-terminal domain, peripheral subdomain | 0.56 | 42.0 | 4.31e-01 | 100.0% | 100.0% |
| 1jbjA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 45.0 | 3.78e-01 | 100.0% | 52.0% |
| 5xbfA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.54 | 40.0 | 3.49e-01 | 100.0% | 49.4% |
| 2wadA02 | 3.90.1310.10 | Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) | 0.54 | 41.0 | 3.05e-01 | 100.0% | 29.1% |
| 2j8bA00 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.54 | 41.0 | 3.60e-01 | 100.0% | 57.7% |
| 2a90A02 | 3.30.720.50 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.53 | 41.0 | 3.78e-01 | 95.1% | 100.0% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4186857 | 4012.1.1.0 ↗ | a+b two layers › SSHS domain › SSHS domain in type II DNA topoisomerase › SSHS domain in type II DNA topoisomerase | 0.84 | 68.0 | 6.91e-01 | 100.0% | 92.5% |
| 4531584 | 4012.1.1.0 ↗ | a+b two layers › SSHS domain › SSHS domain in type II DNA topoisomerase › SSHS domain in type II DNA topoisomerase | 0.79 | 61.0 | 6.16e-01 | 100.0% | 92.5% |
| 3738248 | 221.1.1.6 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA | 0.70 | 54.0 | 4.60e-01 | 100.0% | 50.7% |
| 4929359 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.68 | 53.0 | 4.90e-01 | 100.0% | 67.3% |
| 3465504 | 4076.1.1.0 ↗ | a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like | 0.66 | 49.0 | 4.75e-01 | 100.0% | 74.0% |
| 4331897 | 235.1.1.41 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › TraH_2 | 0.64 | 52.0 | 3.64e-01 | 97.6% | 41.3% |
| 3497076 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.64 | 50.0 | 3.99e-01 | 100.0% | 41.1% |
| 3338287 | 221.1.1.166 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PF26130 | 0.62 | 48.0 | 4.37e-01 | 100.0% | 64.6% |
| 3326623 | 221.1.1.166 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PF26130 | 0.59 | 46.0 | 4.11e-01 | 100.0% | 61.4% |
| 3962632 | 7504.1.1.3 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Maf | 0.56 | 43.0 | 3.04e-01 | 85.4% | 42.9% |
| None | — | 0.54 | 44.0 | 2.59e-01 | 97.6% | 13.2% | |
| 3746678 | 382.1.1.16 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › CD59 | 0.53 | 39.0 | 3.54e-01 | 100.0% | 60.0% |