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KC310803.1__AGK86584.1__S-CBP3_0027__00028

Bact-Vir

KC310803.1__AGK86584.1__S-CBP3_0027__00028

Identity

Accession:
KC310803 ↗
Kingdom:
phage

Quality

88.7 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 75-252
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00589.28 best Phage_integrase 84.8 9.00e-24 96.6% 95.9%
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1aihA00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.88 72.0 7.38e-01 100.0% 88.2%
4a8eA02 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.85 68.0 6.81e-01 87.6% 81.6%
3nkhA00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.83 79.0 7.24e-01 98.3% 93.7%
2a3vA02 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.80 73.0 6.85e-01 95.5% 93.8%
5jk0B01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.80 73.0 7.41e-01 97.2% 98.3%
1f44A01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.77 70.0 6.79e-01 96.1% 96.4%
4acoA02 1.10.443.20 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Centromere DNA-binding protein complex CBF3 subunit, domain 2 0.71 56.0 4.48e-01 82.0% 66.1%
2h7fX02 3.90.15.10 Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 0.69 65.0 5.79e-01 99.4% 83.0%
1floC02 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.67 63.0 5.53e-01 100.0% 82.1%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4637388 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.89 77.0 7.88e-01 97.8% 92.4%
4973226 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.89 57.0 7.04e-01 74.2% 96.7%
5016981 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.89 56.0 6.92e-01 72.5% 95.0%
4930303 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.88 54.0 6.78e-01 72.5% 95.7%
4380833 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.88 77.0 8.02e-01 100.0% 97.6%
4183457 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.87 67.0 7.46e-01 91.0% 97.2%
5016957 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.86 77.0 7.80e-01 92.7% 98.3%
5058518 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.85 74.0 7.13e-01 89.3% 83.1%
4979786 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.85 54.0 6.58e-01 73.0% 95.0%
5028306 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.84 79.0 7.92e-01 100.0% 96.7%
4966027 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.84 77.0 7.65e-01 96.6% 92.4%
3964171 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.84 76.0 7.77e-01 100.0% 96.6%
4975762 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 54.0 6.47e-01 70.2% 93.6%
4994277 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 78.0 7.80e-01 100.0% 97.2%
4122043 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.82 54.0 6.52e-01 71.9% 97.5%
5002702 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.82 76.0 7.44e-01 100.0% 90.5%
4940211 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.82 73.0 7.45e-01 96.6% 96.5%
5076857 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.82 71.0 7.16e-01 96.6% 91.4%
5059725 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.82 76.0 7.57e-01 100.0% 95.6%
5083506 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.82 78.0 7.67e-01 98.9% 95.7%
5061203 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 78.0 7.64e-01 100.0% 95.3%
4453818 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 63.0 6.91e-01 80.3% 94.7%
4475168 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 75.0 7.23e-01 95.5% 89.2%
4181053 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 78.0 7.43e-01 100.0% 92.5%
4004483 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 77.0 7.50e-01 100.0% 92.6%
5072041 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 53.0 6.14e-01 71.9% 90.0%
5007182 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.80 58.0 6.23e-01 86.0% 84.5%
4210863 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 52.0 6.10e-01 70.8% 90.0%
4357768 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.80 52.0 6.10e-01 70.2% 90.0%
4954527 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 69.0 6.38e-01 89.3% 77.7%
4004773 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 54.0 6.37e-01 72.5% 96.8%
4007744 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 76.0 7.21e-01 100.0% 98.0%
5008693 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.79 69.0 6.43e-01 89.3% 81.9%
4964439 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.79 74.0 6.90e-01 97.8% 94.0%
5057283 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.79 53.0 6.11e-01 71.9% 89.6%
3587110 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.79 55.0 6.03e-01 70.8% 90.7%
5030401 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.79 53.0 6.14e-01 71.9% 90.4%
4929009 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.79 54.0 6.33e-01 71.3% 95.4%
3942380 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.79 56.0 5.76e-01 71.9% 86.9%
4932090 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.78 52.0 6.24e-01 71.9% 96.8%
4934137 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.78 55.0 5.92e-01 71.9% 94.2%
4961917 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.78 62.0 6.10e-01 100.0% 77.4%
4200953 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.78 56.0 5.99e-01 73.0% 93.5%
4938177 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.78 54.0 6.05e-01 71.3% 94.5%
3589779 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.77 55.0 5.97e-01 71.9% 96.7%
4964815 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.77 55.0 6.04e-01 73.0% 96.0%
4965169 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.77 68.0 6.45e-01 93.3% 94.3%
4981966 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.77 73.0 7.02e-01 100.0% 93.5%
3964657 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.77 71.0 6.84e-01 96.1% 89.7%
4192665 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.77 50.0 6.08e-01 71.3% 97.5%
3942448 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.76 54.0 5.88e-01 72.5% 96.7%
4940128 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.75 52.0 6.17e-01 71.3% 99.2%
3839627 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.75 53.0 6.01e-01 71.9% 93.3%
5003452 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.75 53.0 6.09e-01 72.5% 97.7%
4965845 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.75 70.0 6.89e-01 100.0% 98.9%
3271483 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.74 66.0 6.44e-01 93.3% 95.8%
4101478 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.74 52.0 5.77e-01 71.9% 95.9%
4182686 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.74 70.0 6.81e-01 100.0% 97.4%
4940634 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.73 52.0 5.76e-01 72.5% 93.8%
5008464 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.73 69.0 6.79e-01 100.0% 95.7%
4962932 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.73 52.0 5.38e-01 71.9% 97.0%
3839222 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.72 51.0 5.70e-01 72.5% 93.6%
3251731 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.69 49.0 5.26e-01 71.9% 92.9%
5044666 101.1.8.2 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Topoisom_I 0.69 48.0 5.12e-01 71.9% 89.4%
D2 medium residues 6-69
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2kobA01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.88 68.0 5.91e-01 87.5% 55.9%
2kkpA00 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.84 72.0 5.83e-01 93.8% 52.1%
1z19A01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.83 73.0 6.22e-01 95.3% 61.0%
2kd1A00 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.83 75.0 6.08e-01 100.0% 55.1%
3lysA00 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.82 71.0 5.94e-01 93.8% 57.1%
3qxzA02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.75 51.0 5.31e-01 76.6% 76.7%
2cobA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.73 38.0 4.47e-01 82.8% 72.7%
4go1A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 40.0 4.31e-01 84.4% 68.5%
2yksA02 1.20.58.390 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain 0.68 57.0 4.71e-01 93.8% 65.0%
2bvlA01 1.20.58.1190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.67 57.0 5.18e-01 93.8% 96.5%
3czpB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.66 54.0 3.76e-01 90.6% 41.3%
1q77A00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.65 53.0 4.12e-01 89.1% 55.1%
5uh5D02 1.10.132.30 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › RNA polymerase Rpb1 funnel domain 0.64 51.0 4.00e-01 87.5% 66.7%
5nl6B01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 52.0 4.31e-01 93.8% 82.6%
1bcrA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.58 48.0 3.30e-01 95.3% 63.8%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4142699 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.90 77.0 6.50e-01 90.6% 59.0%
4175280 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.90 76.0 6.29e-01 89.1% 55.2%
4959184 186.1.1.4 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 0.90 76.0 6.56e-01 90.6% 63.2%
4996189 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.89 80.0 6.67e-01 96.9% 61.0%
4979940 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.87 75.0 6.19e-01 93.8% 56.4%
4064194 186.1.1.4 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 0.87 74.0 5.92e-01 92.2% 50.0%
3504160 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.86 78.0 6.44e-01 100.0% 60.9%
4962931 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.85 76.0 6.23e-01 100.0% 60.0%
170034 186.1.1.5 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_3 0.83 75.0 6.22e-01 100.0% 59.1%
4051052 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.82 74.0 6.17e-01 100.0% 59.1%
5024627 186.1.1.4 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 0.82 70.0 6.01e-01 100.0% 60.0%
5028331 186.1.1.4 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 0.81 67.0 5.86e-01 98.4% 61.1%
3838436 186.1.1.0 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.79 72.0 6.50e-01 100.0% 80.0%
3953011 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.74 39.0 4.19e-01 82.8% 58.2%
3789294 610.2.1.1 alpha arrays › ERP29 C domain-like › Helical domain of Sec23/24 › Helical domain of Sec23/24 › Sec23_helical 0.73 61.0 4.88e-01 92.2% 66.4%
3633521 101.46.1.0 alpha arrays › HTH › Parafibromin N-terminal domain › Parafibromin N-terminal domain 0.72 60.0 4.50e-01 93.8% 72.5%
3322319 610.2.1.2 alpha arrays › ERP29 C domain-like › Helical domain of Sec23/24 › Helical domain of Sec23/24 › Gelsolin, Sec23_helical 0.71 60.0 4.00e-01 93.8% 92.4%
3579797 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.71 39.0 3.62e-01 84.4% 42.5%
3182078 109.4.1.681 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans_2 0.70 62.0 3.73e-01 98.4% 36.3%
5054050 3896.1.1.0 alpha duplicates or obligate multimers › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase 0.70 59.0 4.21e-01 95.3% 44.1%
1117745 7581.1.1.0 a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like 0.61 46.0 3.25e-01 82.8% 52.1%
4945097 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 36.0 3.76e-01 79.7% 70.0%
3865234 7581.1.1.22 a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_N, ketoacyl-synt 0.55 46.0 3.06e-01 95.3% 23.2%