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KC310803.1__AGK86609.1__S-CBP3_0054__00053
Bact-VirKC310803.1__AGK86609.1__S-CBP3_0054__00053
Identity
- Accession:
- KC310803 ↗
- Kingdom:
- phage
Quality
87.9
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Autographivirales›
Lirvirus›
Synechococcus_phage_S-CBP3
TaxID: 756276
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-117
Domain cluster:
rep: NC_027397.1__YP_009153046.1__ACQ41_gp20__00020__D9-117
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03906.21 best | Phage_T7_tail | 67.8 | 1.30e-18 | 91.1% | 76.0% |
D2
high
residues 353-454
Domain cluster:
rep: MW073017.1__QPB08539.1__X__00060__D1038-1127
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13884.12 best | Peptidase_S74 | 29.7 | 8.70e-07 | 41.2% | 69.0% |
D3
medium
residues 223-282
Domain cluster:
rep: OP053362.1__UYE97273.1__X__00108__D357-406
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2q07A02 | 3.10.450.90 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › ArcTGT, C2 domain | 0.66 | 46.0 | 4.56e-01 | 95.0% | 67.7% |
| 4fbcA01 | 3.40.420.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 | 0.65 | 47.0 | 3.44e-01 | 78.3% | 66.1% |
| 1ospO02 | 3.90.930.1 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › | 0.63 | 46.0 | 3.56e-01 | 80.0% | 93.2% |
| 3r90A00 | 3.10.400.20 | Alpha Beta › Roll › Sulfate adenylyltransferase › | 0.62 | 45.0 | 3.21e-01 | 98.3% | 24.9% |
| 2k6hA01 | 3.40.420.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 | 0.62 | 45.0 | 3.32e-01 | 78.3% | 69.2% |
| 4h0oA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.59 | 41.0 | 2.96e-01 | 80.0% | 24.7% |
| 2ozhA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.59 | 41.0 | 3.17e-01 | 73.3% | 80.5% |
| 2q74A01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.59 | 44.0 | 3.53e-01 | 83.3% | 56.6% |
| 4esnA00 | 2.60.320.10 | Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › N-utilization substance G protein NusG, insert domain | 0.58 | 39.0 | 3.70e-01 | 71.7% | 64.1% |
| 2q04F00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.58 | 50.0 | 3.52e-01 | 100.0% | 72.9% |
| 3o6uC00 | 3.90.1010.20 | Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › | 0.58 | 39.0 | 3.22e-01 | 70.0% | 78.2% |
| 2od0A00 | 3.30.1460.30 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › YgaC/TfoX-N like chaperone | 0.58 | 44.0 | 3.78e-01 | 85.0% | 81.6% |
| 2x3hA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.58 | 45.0 | 2.65e-01 | 100.0% | 10.2% |
| 3i9sA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.57 | 42.0 | 3.05e-01 | 78.3% | 75.8% |
| 1ulvA01 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.56 | 45.0 | 2.98e-01 | 91.7% | 70.6% |
| 2kzxA00 | 3.90.1010.20 | Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › | 0.55 | 39.0 | 3.08e-01 | 73.3% | 80.2% |
| 3tssA02 | 2.40.50.110 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.55 | 38.0 | 3.64e-01 | 73.3% | 93.0% |
| 2jrbA00 | 3.30.250.20 | Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › L1 transposable element, C-terminal domain | 0.54 | 36.0 | 3.58e-01 | 70.0% | 75.4% |
| 1q7hA01 | 3.10.450.120 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Pre-PUA domain; domain 1 | 0.53 | 45.0 | 4.44e-01 | 93.3% | 96.9% |
| 7k98B04 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.52 | 39.0 | 2.67e-01 | 81.7% | 24.7% |
| 3d2uE01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.52 | 46.0 | 3.29e-01 | 100.0% | 78.7% |
| 3u97A00 | 3.10.450.530 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Ribonuclease toxin, BrnT, of type II toxin-antitoxin system | 0.52 | 37.0 | 3.40e-01 | 81.7% | 57.1% |
| 1z4eA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.51 | 45.0 | 3.40e-01 | 100.0% | 86.7% |
| 3owcB00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.51 | 43.0 | 3.24e-01 | 100.0% | 63.5% |
| 3vsmA03 | 2.60.40.4340 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 44.0 | 3.86e-01 | 100.0% | 72.3% |
| 3h4qA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.50 | 42.0 | 3.30e-01 | 100.0% | 88.3% |
| 1p7lA03 | 3.30.300.10 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › | 0.50 | 39.0 | 3.21e-01 | 83.3% | 84.0% |
| 3d5lB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 35.0 | 3.10e-01 | 76.7% | 81.4% |
ECOD (48)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4025709 | 79.1.1.0 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain | 0.70 | 51.0 | 4.97e-01 | 100.0% | 70.8% |
| 3479475 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.70 | 47.0 | 3.17e-01 | 71.7% | 36.1% |
| 4934918 | 331.2.1.0 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain | 0.69 | 41.0 | 3.94e-01 | 91.7% | 51.4% |
| 4996528 | 243.6.1.0 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain | 0.66 | 43.0 | 4.61e-01 | 91.7% | 80.0% |
| 4928895 | 79.1.1.0 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain | 0.65 | 60.0 | 3.83e-01 | 100.0% | 28.7% |
| 3440495 | 292.1.1.1 ↗ | a+b two layers › RIP/Polo-box domain › Ribosome inactivating proteins (RIP) › Ribosome inactivating proteins (RIP) › RIP | 0.65 | 47.0 | 3.18e-01 | 78.3% | 53.2% |
| 5025174 | 243.6.1.0 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain | 0.65 | 45.0 | 4.31e-01 | 90.0% | 62.9% |
| 142988 | 243.6.1.4 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › Pre-PUA | 0.64 | 45.0 | 3.94e-01 | 96.7% | 48.4% |
| 3277795 | 241.11.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like › YjbR | 0.64 | 49.0 | 3.72e-01 | 81.7% | 75.6% |
| 3961944 | 241.7.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › YgaC/TfoX-N like › YgaC/TfoX-N like › TfoX_N | 0.63 | 50.0 | 4.17e-01 | 85.0% | 84.0% |
| 3681883 | 292.1.1.1 ↗ | a+b two layers › RIP/Polo-box domain › Ribosome inactivating proteins (RIP) › Ribosome inactivating proteins (RIP) › RIP | 0.63 | 45.0 | 2.95e-01 | 76.7% | 42.2% |
| 3443972 | 292.1.1.1 ↗ | a+b two layers › RIP/Polo-box domain › Ribosome inactivating proteins (RIP) › Ribosome inactivating proteins (RIP) › RIP | 0.63 | 45.0 | 2.98e-01 | 76.7% | 45.8% |
| 3459468 | 292.1.1.1 ↗ | a+b two layers › RIP/Polo-box domain › Ribosome inactivating proteins (RIP) › Ribosome inactivating proteins (RIP) › RIP | 0.63 | 45.0 | 2.99e-01 | 78.3% | 40.9% |
| 4976671 | 243.6.1.0 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain | 0.63 | 46.0 | 4.39e-01 | 95.0% | 67.1% |
| 3645770 | 292.1.1.1 ↗ | a+b two layers › RIP/Polo-box domain › Ribosome inactivating proteins (RIP) › Ribosome inactivating proteins (RIP) › RIP | 0.62 | 47.0 | 3.07e-01 | 83.3% | 50.7% |
| 3436989 | 292.1.1.1 ↗ | a+b two layers › RIP/Polo-box domain › Ribosome inactivating proteins (RIP) › Ribosome inactivating proteins (RIP) › RIP | 0.62 | 46.0 | 3.21e-01 | 80.0% | 51.9% |
| 1820980 | 79.1.1.2 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Hyaluronidase_1 | 0.62 | 55.0 | 3.75e-01 | 100.0% | 42.5% |
| 3438481 | 292.1.1.1 ↗ | a+b two layers › RIP/Polo-box domain › Ribosome inactivating proteins (RIP) › Ribosome inactivating proteins (RIP) › RIP | 0.62 | 43.0 | 3.02e-01 | 73.3% | 46.6% |
| 3280585 | 241.11.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like › YjbR | 0.61 | 49.0 | 3.94e-01 | 85.0% | 77.3% |
| 5045830 | 243.6.1.9 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › TGT_C2 | 0.60 | 43.0 | 4.13e-01 | 96.7% | 65.7% |
| 4946134 | 243.6.1.0 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain | 0.60 | 39.0 | 3.86e-01 | 90.0% | 61.5% |
| 4378012 | 241.7.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › YgaC/TfoX-N like › YgaC/TfoX-N like › TfoX_N | 0.59 | 45.0 | 3.78e-01 | 83.3% | 81.0% |
| 5078933 | 2484.1.1.43 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 | 0.59 | 41.0 | 2.86e-01 | 73.3% | 23.8% |
| 4548121 | 243.6.1.9 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › TGT_C2 | 0.58 | 39.0 | 3.79e-01 | 96.7% | 60.0% |
| 5075886 | 243.6.1.1 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 | 0.58 | 49.0 | 4.65e-01 | 93.3% | 97.1% |
| 177706 | 3518.1.1.1 ↗ | a+b two layers › putative RnfG subunit of electron transport complex › putative RnfG subunit of electron transport complex › putative RnfG subunit of electron transport complex › FMN_bind | 0.58 | 39.0 | 3.14e-01 | 70.0% | 87.7% |
| 3648717 | 292.1.1.1 ↗ | a+b two layers › RIP/Polo-box domain › Ribosome inactivating proteins (RIP) › Ribosome inactivating proteins (RIP) › RIP | 0.57 | 42.0 | 2.88e-01 | 83.3% | 40.4% |
| 3900771 | 330.9.1.0 ↗ | a+b two layers › dsRBD-like › C-terminal domain in LINE-1 ORF1p › C-terminal domain in LINE-1 ORF1p | 0.57 | 39.0 | 3.99e-01 | 71.7% | 98.3% |
| 4953037 | 243.6.1.9 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › TGT_C2 | 0.57 | 38.0 | 3.56e-01 | 93.3% | 54.7% |
| 3445390 | 305.2.1.0 ↗ | a+b two layers › DCoH-like › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) | 0.56 | 49.0 | 3.96e-01 | 100.0% | 50.4% |
| 4965319 | 241.11.1.3 ↗ | a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like › Luciferase | 0.56 | 47.0 | 3.72e-01 | 96.7% | 80.7% |
| 4931376 | 314.1.1.11 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA_synthFbeta | 0.56 | 42.0 | 2.93e-01 | 81.7% | 28.5% |
| 3954986 | 213.5.1.0 ↗ | a+b three layers › Nat/Ivy › AlkZ C-terminal domain › AlkZ C-terminal domain | 0.55 | 48.0 | 3.79e-01 | 100.0% | 85.9% |
| 4946183 | 243.6.1.12 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › PUA | 0.54 | 46.0 | 4.27e-01 | 95.0% | 97.3% |
| 3661719 | 292.1.1.1 ↗ | a+b two layers › RIP/Polo-box domain › Ribosome inactivating proteins (RIP) › Ribosome inactivating proteins (RIP) › RIP | 0.54 | 46.0 | 3.01e-01 | 96.7% | 29.8% |
| 3262209 | 243.6.1.4 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › Pre-PUA | 0.53 | 44.0 | 3.90e-01 | 93.3% | 83.3% |
| 4932109 | 7089.1.1.0 ↗ | a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD | 0.53 | 38.0 | 3.64e-01 | 83.3% | 64.3% |
| 5049994 | 243.6.1.4 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › Pre-PUA | 0.53 | 44.0 | 4.18e-01 | 95.0% | 97.3% |
| 4946453 | 247.1.1.12 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_3 | 0.53 | 42.0 | 2.88e-01 | 88.3% | 27.3% |
| 4978884 | 243.6.1.0 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain | 0.53 | 43.0 | 4.03e-01 | 90.0% | 97.3% |
| 4957002 | 243.6.1.0 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain | 0.53 | 43.0 | 3.99e-01 | 93.3% | 95.0% |
| 3838245 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.52 | 37.0 | 3.26e-01 | 75.0% | 73.3% |
| 5065809 | 3518.1.1.1 ↗ | a+b two layers › putative RnfG subunit of electron transport complex › putative RnfG subunit of electron transport complex › putative RnfG subunit of electron transport complex › FMN_bind | 0.52 | 42.0 | 3.28e-01 | 98.3% | 75.0% |
| 4971539 | 243.6.1.1 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 | 0.52 | 44.0 | 4.11e-01 | 96.7% | 97.3% |
| 5044669 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.52 | 45.0 | 3.19e-01 | 95.0% | 70.0% |
| 3968562 | 11.1.1.132 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › YscW | 0.51 | 35.0 | 2.90e-01 | 71.7% | 63.6% |
| 3997581 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.50 | 40.0 | 2.63e-01 | 100.0% | 53.9% |
| 3168887 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.50 | 42.0 | 2.62e-01 | 100.0% | 42.7% |