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KC348599.1__AGF87348.1__phi30c_004__00004

Bact-Vir

KC348599.1__AGF87348.1__phi30c_004__00004

Identity

Accession:
KC348599 ↗
Kingdom:
phage

Quality

67.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-64
PDB
Domain cluster: representative
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6grrB01 3.30.457.10 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Copper amine oxidase-like, N-terminal domain 0.72 43.0 3.98e-01 88.9% 46.8%
2rk9B00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.70 44.0 3.52e-01 93.7% 34.2%
3oajA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.69 45.0 3.46e-01 95.2% 29.9%
1r9cA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.66 42.0 3.41e-01 95.2% 32.8%
1o22A00 3.90.1000.10 Alpha Beta › Alpha-Beta Complex › Orphan Protein Tm0875; Chain: A; › Hypothetical protein TM0875 0.65 33.0 2.47e-01 98.4% 18.8%
2fpnA01 3.30.2030.10 Alpha Beta › 2-Layer Sandwich › TBP-like › YwmB-like 0.65 49.0 3.84e-01 95.2% 37.1%
3w4rA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.64 37.0 3.49e-01 87.3% 47.4%
4hh2B03 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.63 38.0 3.34e-01 71.4% 38.0%
1goiA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.63 40.0 3.55e-01 88.9% 44.4%
1fnoA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.63 56.0 3.59e-01 100.0% 51.9%
1kw3B02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.62 45.0 3.38e-01 93.7% 31.8%
2x3lA01 3.90.1150.150 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.61 56.0 4.68e-01 100.0% 63.8%
2rb7A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.60 53.0 3.54e-01 100.0% 44.7%
2pokA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.60 53.0 3.43e-01 100.0% 40.6%
2qyvA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.59 52.0 3.48e-01 100.0% 42.2%
4my5D01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.58 53.0 3.91e-01 100.0% 48.7%
1xmbA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.58 52.0 3.36e-01 100.0% 38.7%
3bxwA03 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.58 35.0 3.67e-01 81.0% 67.3%
2nwvA00 3.30.310.110 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like 0.58 49.0 4.11e-01 100.0% 55.4%
3qokA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.57 48.0 4.15e-01 92.1% 100.0%
1yuaA02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.57 40.0 4.13e-01 95.2% 82.8%
1uw1A00 3.10.450.210 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 48.0 4.76e-01 98.4% 92.5%
7cm3A01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.56 50.0 3.72e-01 100.0% 57.3%
1f3zA00 2.70.70.10 Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) 0.55 34.0 2.60e-01 100.0% 25.3%
1svvB02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.55 50.0 4.35e-01 100.0% 71.7%
4q05A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 46.0 2.99e-01 100.0% 26.0%
1em2A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 40.0 2.86e-01 81.0% 76.2%
2qmlA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 44.0 3.23e-01 95.2% 42.5%
3cz8A02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.54 35.0 3.60e-01 88.9% 71.9%
4zm3B01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.53 48.0 3.68e-01 100.0% 57.7%
1o4sA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.53 47.0 3.58e-01 100.0% 47.0%
3c0wA01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.53 41.0 3.36e-01 84.1% 61.7%
2z6oA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.53 45.0 3.40e-01 100.0% 38.0%
4qt4A00 3.40.50.1470 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidyl-tRNA hydrolase 0.52 40.0 2.96e-01 100.0% 29.1%
2wb6A00 3.90.1150.90 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.52 42.0 3.50e-01 96.8% 50.9%
5gvcB01 3.40.50.140 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 36.0 2.73e-01 95.2% 28.8%
5hx0A00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.52 44.0 2.73e-01 96.8% 20.3%
4jhyA00 3.30.530.80 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › 0.51 43.0 3.28e-01 96.8% 39.1%
2mjlA00 3.40.50.1470 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidyl-tRNA hydrolase 0.50 39.0 2.83e-01 95.2% 28.4%
2cnzA00 2.60.40.1570 Mainly Beta › Sandwich › Immunoglobulin-like › Dr adhesin 0.50 37.0 3.07e-01 82.5% 52.0%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3960959 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.76 55.0 5.61e-01 95.2% 80.0%
3169657 4099.1.1.47 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › PF30282 0.75 55.0 4.50e-01 98.4% 42.6%
4946710 876.1.1.0 a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin 0.70 46.0 4.40e-01 95.2% 57.3%
5003263 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.69 47.0 3.85e-01 93.7% 37.5%
1106759 284.2.1.0 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.68 46.0 4.03e-01 87.3% 46.9%
4243468 5.1.4.262 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_CAF1B_HIR1 0.67 49.0 2.97e-01 79.4% 11.5%
5073524 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.66 53.0 3.98e-01 96.8% 36.1%
4964457 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.64 47.0 3.75e-01 96.8% 39.2%
5010025 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.64 51.0 4.17e-01 100.0% 45.8%
3648232 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.63 47.0 2.93e-01 79.4% 15.6%
3990414 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.63 54.0 4.07e-01 95.2% 41.4%
5048054 2011.1.1.8 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 0.62 55.0 3.57e-01 100.0% 33.2%
3412623 216.1.1.1 a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.62 49.0 3.75e-01 98.4% 36.7%
1839913 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.62 57.0 4.87e-01 100.0% 70.5%
3545942 5.1.11.11 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › WD40 0.62 44.0 2.73e-01 79.4% 12.5%
3788003 220.1.1.112 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_10 0.61 46.0 3.46e-01 79.4% 35.9%
3419015 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.61 41.0 4.50e-01 77.8% 88.0%
3663084 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.61 54.0 4.15e-01 100.0% 51.0%
3246034 216.1.1.2 a+b two layers › UBC-like › UBC-like › UBC-like › Autophagy_act_C 0.61 46.0 3.58e-01 100.0% 35.3%
None 0.60 53.0 3.21e-01 98.4% 60.2%
3402152 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.60 43.0 3.56e-01 98.4% 40.8%
3389537 216.1.1.4 a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.59 51.0 4.08e-01 96.8% 50.4%
3984762 2011.1.1.6 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M20 0.58 52.0 3.78e-01 100.0% 61.1%
3972302 2011.1.1.0 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases 0.58 52.0 3.38e-01 100.0% 37.9%
3652419 243.3.1.19 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 0.58 43.0 3.51e-01 79.4% 52.5%
4029709 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.58 50.0 4.09e-01 100.0% 52.0%
3948067 2011.1.1.6 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M20 0.58 52.0 3.34e-01 100.0% 38.2%
3944524 295.1.1.26 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › BssS 0.58 37.0 3.58e-01 71.4% 58.6%
3783625 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 38.0 2.37e-01 79.4% 11.5%
5032320 242.1.1.2 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_2 0.57 44.0 4.04e-01 84.1% 77.6%
3596326 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.56 46.0 3.56e-01 95.2% 81.2%
3929482 2008.6.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains 0.56 46.0 3.63e-01 100.0% 44.4%
4001569 109.4.1.1493 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Zw10_middle, ZW10_C, ZW10_C2 0.56 41.0 2.39e-01 79.4% 27.9%
5026193 873.1.1.0 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.56 50.0 3.91e-01 100.0% 63.7%
3499566 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.56 41.0 2.46e-01 79.4% 11.5%
4484798 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.56 48.0 4.12e-01 100.0% 61.1%
5041474 2011.1.1.6 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M20 0.56 50.0 3.33e-01 96.8% 43.0%
3466613 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.56 47.0 3.78e-01 100.0% 48.3%
3626364 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.55 39.0 3.24e-01 100.0% 41.7%
3272765 809.1.1.0 a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP 0.54 42.0 3.68e-01 95.2% 55.8%
3687614 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.54 40.0 3.66e-01 82.5% 75.6%
4961351 242.1.1.10 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › PF26411 0.54 39.0 3.35e-01 77.8% 87.3%
4560015 284.2.1.0 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.54 35.0 3.34e-01 71.4% 56.0%
4996608 2007.9.1.4 a/b three-layered sandwiches › Flavodoxin-like › Toll/Interleukin receptor TIR domain › Toll/Interleukin receptor TIR domain › TIR_2 0.54 40.0 2.80e-01 100.0% 25.0%
3740580 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 37.0 2.68e-01 100.0% 25.7%
5004031 873.1.1.1 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › V4R 0.53 44.0 3.37e-01 96.8% 57.0%
3504543 4188.1.1.1 a+b complex topology › BB1717-like › BB1717-like › BB1717-like › SRAP 0.53 37.0 2.72e-01 74.6% 65.2%
4964480 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.53 43.0 3.26e-01 93.7% 60.0%
3962174 2011.1.1.0 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases 0.53 47.0 3.07e-01 100.0% 37.6%
3784260 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.53 41.0 2.58e-01 90.5% 38.7%
3462119 9.1.1.23 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF3598_N 0.53 45.0 3.34e-01 100.0% 43.8%
3937192 5.1.11.27 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › Det1 0.53 43.0 2.78e-01 100.0% 29.5%
3496158 2006.1.3.2 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim 0.53 37.0 2.86e-01 95.2% 32.4%
4946684 2004.1.1.308 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 0.52 44.0 2.80e-01 98.4% 22.0%
4975506 304.24.1.0 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.51 43.0 4.06e-01 100.0% 78.7%
3181540 304.7.1.2 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Inhibitor_I9 0.50 41.0 4.10e-01 96.8% 86.2%
3869205 5.1.4.31 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lgl_C 0.50 37.0 2.27e-01 82.5% 60.7%