←Back to structures

KC348599.1__AGF87376.1__phi30c_0032__00032

Bact-Vir

KC348599.1__AGF87376.1__phi30c_0032__00032

Identity

Accession:
KC348599 ↗
Kingdom:
phage

Quality

93.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Streptococcus_phage_phi30c

TaxID: 1289596

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-69
PDB
Domain cluster: rep: NC_022756.1__YP_008767305.1__J1_62__00062__D113-177
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.62 48.0 4.82e-01 100.0% 84.1%
3kxtA00 2.30.30.610 Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 0.60 44.0 4.67e-01 82.5% 89.3%
3f6gA02 3.30.160.340 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.60 39.0 3.95e-01 71.4% 66.7%
4dy0B02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.60 38.0 3.05e-01 74.6% 31.2%
1q47A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 49.0 2.95e-01 95.2% 34.5%
4dduA07 2.60.510.20 Mainly Beta › Sandwich › EV matrix protein fold › 0.58 41.0 3.43e-01 73.0% 66.4%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.58 45.0 4.42e-01 100.0% 78.3%
7pkwA01 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 49.0 4.23e-01 96.8% 72.8%
2lexA00 2.20.25.80 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › WRKY domain 0.57 37.0 3.77e-01 76.2% 66.7%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.57 43.0 4.07e-01 100.0% 68.0%
2rrfA00 2.30.29.160 Mainly Beta › Roll › PH-domain like › Zinc finger FYVE domain-containing protein 21, C-terminal 0.56 48.0 3.81e-01 100.0% 46.1%
2qkdA03 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.56 39.0 4.21e-01 96.8% 94.1%
4r6uA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 43.0 3.93e-01 100.0% 62.5%
2qkdA01 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.55 38.0 4.20e-01 81.0% 95.8%
4kh9B02 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.54 47.0 3.92e-01 100.0% 82.3%
3kyaA02 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.54 42.0 2.72e-01 93.7% 25.1%
1foeC02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 46.0 3.49e-01 100.0% 52.8%
1kiaA01 3.30.46.10 Alpha Beta › 2-Layer Sandwich › Glycine N-methyltransferase; chain A, domain 1 › Glycine N-methyltransferase, chain A, domain 1 0.53 45.0 4.17e-01 98.4% 79.5%
4lgvD02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.53 45.0 3.01e-01 96.8% 63.0%
1vwxT01 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.53 40.0 3.55e-01 84.1% 55.7%
2lrsA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 36.0 3.56e-01 79.4% 67.6%
2k4vA00 3.30.160.370 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Domain of unknown function DUF5064 0.52 42.0 3.40e-01 96.8% 45.6%
2dixA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 36.0 3.43e-01 77.8% 60.3%
2yh9B00 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.52 37.0 3.62e-01 95.2% 70.6%
4l8hB00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.51 43.0 3.52e-01 95.2% 65.9%
3htyA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.51 44.0 3.88e-01 98.4% 67.0%
3upuA03 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.51 43.0 3.48e-01 98.4% 62.6%
2hqlA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 41.0 3.70e-01 93.7% 87.9%
2v8qB00 6.20.250.60 Special › Other non-globular › Double Stranded RNA Binding Domain › 0.50 41.0 3.92e-01 92.1% 78.1%
1n2bB02 3.30.1300.10 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain 0.50 40.0 3.51e-01 100.0% 56.7%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5014254 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.64 50.0 5.12e-01 100.0% 90.0%
3413293 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.64 54.0 3.37e-01 93.7% 48.3%
3887954 10.1.1.72 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › CRLF3_C 0.64 44.0 3.30e-01 74.6% 66.1%
4965521 3414.1.1.13 ↗ beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein › PF29994 0.62 46.0 3.83e-01 100.0% 45.5%
4976136 331.10.2.0 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.62 42.0 3.72e-01 100.0% 47.4%
3658408 4325.1.1.13 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF4371 0.61 44.0 4.16e-01 76.2% 65.3%
3676745 2484.1.1.157 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF4371 0.61 44.0 3.41e-01 76.2% 38.6%
5021263 3414.1.1.13 ↗ beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein › PF29994 0.61 47.0 3.76e-01 100.0% 42.4%
4946993 4.1.1.479 ↗ beta barrels › SH3 › SH3 › SH3 › eIF-5a 0.60 47.0 4.55e-01 100.0% 77.1%
3594465 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 41.0 4.34e-01 73.0% 94.5%
3941239 5.1.4.12 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema 0.60 49.0 2.94e-01 93.7% 30.4%
4990492 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 42.0 4.61e-01 76.2% 98.0%
3683658 2484.1.1.157 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF4371 0.59 42.0 2.65e-01 77.8% 13.9%
3948467 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.58 45.0 4.48e-01 100.0% 83.1%
3282536 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.57 42.0 3.93e-01 79.4% 71.2%
3212498 243.3.1.70 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PF30099 0.57 49.0 4.37e-01 100.0% 67.8%
4966532 3414.1.1.13 ↗ beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein › PF29994 0.57 50.0 4.32e-01 100.0% 81.0%
3882182 220.1.1.132 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › KRIT1_FRMD8_FERM_C 0.56 49.0 3.92e-01 100.0% 48.5%
4990210 283.2.1.8 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › PF29994 0.56 49.0 4.32e-01 100.0% 87.4%
3693249 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.55 38.0 3.02e-01 71.4% 36.2%
3614844 220.1.1.15 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › BBL5 0.55 48.0 3.73e-01 100.0% 44.3%
4946160 4.26.1.0 ↗ beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 0.55 39.0 3.97e-01 77.8% 78.3%
3197023 5.1.4.36 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N 0.55 45.0 2.83e-01 93.7% 45.2%
3469443 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.55 41.0 4.22e-01 100.0% 85.0%
3969155 283.2.1.1 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 0.55 47.0 3.63e-01 100.0% 64.5%
3259407 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.55 41.0 3.79e-01 98.4% 61.2%
3968646 283.2.1.1 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 0.55 47.0 3.79e-01 100.0% 66.9%
3496242 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 38.0 4.15e-01 93.7% 96.0%
4999946 283.1.1.0 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase 0.54 46.0 4.26e-01 100.0% 80.0%
5002447 3414.1.1.13 ↗ beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein › PF29994 0.53 46.0 4.09e-01 100.0% 85.3%
4012633 277.1.1.0 ↗ a+b two layers › PX domain › PX domain › PX domain 0.53 36.0 2.74e-01 71.4% 27.3%
4379266 316.1.1.1 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PolyA_pol 0.53 37.0 2.82e-01 100.0% 28.2%
1070873 11.1.1.299 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF4785_2nd 0.53 47.0 3.96e-01 100.0% 87.7%
4937410 330.2.1.0 ↗ a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) 0.53 45.0 3.95e-01 96.8% 71.6%
4950394 3414.1.1.13 ↗ beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein › PF29994 0.53 46.0 3.92e-01 100.0% 78.1%
5024241 330.2.1.5 ↗ a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › PF29181 0.52 42.0 3.72e-01 98.4% 60.0%
4952885 3414.1.1.13 ↗ beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein › PF29994 0.52 45.0 4.02e-01 100.0% 86.3%
4957407 3414.1.1.13 ↗ beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein › PF29994 0.52 46.0 3.65e-01 100.0% 68.5%
4935679 3414.1.1.13 ↗ beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein › PF29994 0.52 45.0 4.06e-01 100.0% 88.9%
184719 3514.1.1.1 ↗ a+b two layers › uncharacterized protein PA1076 › uncharacterized protein PA1076 › uncharacterized protein PA1076 › DUF5064 0.52 42.0 3.40e-01 96.8% 45.6%
3614237 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.51 44.0 3.50e-01 100.0% 77.2%
3502794 4.8.1.2 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.51 35.0 3.55e-01 74.6% 70.8%
4013811 4.8.1.22 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF7025 0.50 39.0 3.62e-01 95.2% 63.3%
3670792 243.3.1.67 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Phytochelatin_C 0.50 43.0 4.34e-01 98.4% 95.4%