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KC348599.1__AGF87382.1__phi30c_0038__00038

Bact-Vir

KC348599.1__AGF87382.1__phi30c_0038__00038

Identity

Accession:
KC348599 ↗
Kingdom:
phage

Quality

68.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Streptococcus_phage_phi30c

TaxID: 1289596

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-49
PDB
Domain cluster: representative
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2vhjA02 2.30.270.20 Mainly Beta › Roll › duf1285 protein fold › 0.68 46.0 4.21e-01 81.4% 50.0%
3kflA02 2.170.220.10 Mainly Beta › Beta Complex › Methionyl-trna Synthetase; domain 2 › 0.67 54.0 4.01e-01 100.0% 33.9%
4c3iG02 2.40.50.1060 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.64 44.0 3.14e-01 74.4% 23.0%
3lxrF00 1.10.4120.20 Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › 0.64 45.0 2.99e-01 76.7% 84.0%
3j7aF02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.63 45.0 4.41e-01 81.4% 100.0%
2kxqA01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.62 41.0 4.47e-01 72.1% 100.0%
2ysiA01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.62 42.0 4.42e-01 72.1% 97.0%
1b9wA02 2.10.25.10 Mainly Beta › Ribbon › Laminin › Laminin 0.61 42.0 4.41e-01 72.1% 81.6%
6az1E02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.61 43.0 4.19e-01 81.4% 100.0%
2yshA01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.61 40.0 4.20e-01 90.7% 87.9%
5cq2A02 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.61 42.0 4.28e-01 74.4% 79.1%
2jxwA00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.60 41.0 3.56e-01 72.1% 41.3%
1olzA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 46.0 2.63e-01 90.7% 27.6%
1ef1A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.58 39.0 3.37e-01 100.0% 40.5%
1h2iA01 3.30.390.80 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › DNA repair protein Rad52/59/22 0.57 43.0 3.12e-01 86.0% 89.9%
7o06C01 3.30.1470.10 Alpha Beta › 2-Layer Sandwich › Photosystem 1 Reaction Centre Subunit Ii; Chain: D; › Photosystem I PsaD, reaction center subunit II 0.57 41.0 3.33e-01 74.4% 37.4%
4bpnW02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.57 40.0 3.96e-01 83.7% 100.0%
3nbxX04 2.40.128.430 Mainly Beta › Beta Barrel › Lipocalin › 0.56 46.0 3.61e-01 100.0% 68.2%
1a2fA02 1.10.420.10 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 2 › Peroxidase, domain 2 0.56 43.0 3.32e-01 95.3% 60.3%
6jzaA00 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.56 39.0 3.30e-01 100.0% 40.7%
3le4A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.55 39.0 3.71e-01 100.0% 61.8%
3nqhA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.55 43.0 2.63e-01 93.0% 20.8%
1vx7000 2.30.170.20 Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L24 0.55 42.0 3.86e-01 88.4% 83.9%
1vq8U00 2.30.170.20 Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L24 0.55 41.0 3.98e-01 88.4% 81.1%
2kr7A02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.54 39.0 3.64e-01 79.1% 91.2%
3n71A01 2.170.270.10 Mainly Beta › Beta Complex › Beta-clip-like › SET domain 0.54 42.0 3.36e-01 90.7% 94.6%
3cuqA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 37.0 3.18e-01 79.1% 81.2%
5xukA00 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.53 42.0 3.22e-01 95.3% 53.0%
3mpxA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 39.0 3.14e-01 86.0% 50.5%
2js3A01 1.10.287.780 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ITPase-like domains 0.53 37.0 3.24e-01 79.1% 48.7%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 41.0 3.69e-01 100.0% 80.0%
5eo9A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 38.0 2.94e-01 83.7% 89.7%
3tm4A01 3.30.2130.30 Alpha Beta › 2-Layer Sandwich › VC0802-like › 0.51 34.0 2.28e-01 72.1% 59.8%
2wyhB06 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.51 35.0 2.27e-01 81.4% 87.6%
1c0gA03 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.50 38.0 3.17e-01 93.0% 88.0%
1p5uB00 2.60.40.1090 Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrial-type adhesion domain 0.50 34.0 2.45e-01 74.4% 35.6%
6p2uA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.50 40.0 3.88e-01 95.3% 96.2%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4473847 2005.1.1.1 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.77 65.0 3.76e-01 100.0% 10.5%
4180071 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.77 61.0 6.04e-01 100.0% 86.7%
3744488 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.76 65.0 5.90e-01 100.0% 91.7%
3229548 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.74 60.0 5.97e-01 100.0% 91.1%
4361081 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.73 56.0 5.61e-01 100.0% 86.7%
3540263 377.1.1.50 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › ZMYM4 0.72 53.0 5.27e-01 81.4% 80.0%
3372361 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.69 50.0 5.19e-01 79.1% 85.0%
5043972 375.1.1.26 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.69 51.0 4.08e-01 86.0% 75.8%
4026161 4.1.1.7 ↗ beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 0.68 55.0 4.03e-01 93.0% 72.0%
3604946 2005.1.1.29 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1g 0.66 54.0 3.27e-01 100.0% 13.2%
3992209 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.65 44.0 4.44e-01 72.1% 75.6%
3228875 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.65 45.0 4.16e-01 72.1% 60.0%
3477189 375.14.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) 0.65 52.0 5.18e-01 100.0% 93.3%
3845445 377.1.1.16 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-FCS 0.65 51.0 5.03e-01 86.0% 84.4%
3907975 377.1.1.50 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › ZMYM4 0.65 49.0 4.93e-01 86.0% 84.4%
3606495 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.64 46.0 4.12e-01 79.1% 53.1%
3926998 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.64 52.0 4.43e-01 100.0% 57.5%
3723770 7502.1.1.0 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.64 45.0 3.71e-01 76.7% 90.6%
3800040 5.1.4.422 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_Rol-3 0.63 47.0 2.97e-01 81.4% 96.4%
1614032 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.62 43.0 4.48e-01 74.4% 89.2%
3404953 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.61 43.0 4.42e-01 74.4% 82.5%
4929725 375.1.1.289 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF5679 0.60 46.0 4.59e-01 90.7% 100.0%
4031151 4056.1.1.0 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.60 48.0 4.21e-01 100.0% 80.0%
3927111 2007.2.3.7 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Myotub-related 0.60 43.0 2.49e-01 76.7% 16.8%
3288999 213.1.1.25 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_3 0.60 42.0 2.84e-01 74.4% 57.1%
3885623 101.1.8.12 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › DUF3504 0.59 50.0 3.34e-01 100.0% 60.5%
3532171 377.1.1.16 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-FCS 0.59 45.0 4.47e-01 86.0% 84.4%
3913312 377.1.1.50 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › ZMYM4 0.57 43.0 4.31e-01 86.0% 84.4%
5073214 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.57 43.0 3.80e-01 83.7% 61.4%
3680502 377.1.1.6 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e 0.57 43.0 3.15e-01 88.4% 36.4%
4958534 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.56 42.0 3.33e-01 81.4% 98.9%
3708672 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.56 39.0 3.27e-01 74.4% 40.0%
2387777 2003.1.15.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Glycosyltransferase Maf N-terminal domain › Maf_flag10_N 0.56 38.0 2.49e-01 74.4% 50.2%
4942722 377.1.1.6 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e 0.56 42.0 3.60e-01 88.4% 66.3%
3610398 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.55 38.0 3.36e-01 74.4% 46.7%
4379563 375.1.1.289 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF5679 0.55 44.0 4.36e-01 93.0% 91.1%
4932487 377.1.1.6 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e 0.54 42.0 3.68e-01 90.7% 71.4%
3731209 377.1.1.6 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e 0.54 41.0 3.35e-01 90.7% 52.0%
3960804 327.5.1.2 ↗ a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C 0.53 37.0 2.77e-01 76.7% 63.7%
3192627 633.1.1.1 ↗ alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.52 41.0 2.79e-01 95.3% 30.8%
4010148 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.51 39.0 2.62e-01 72.1% 45.6%
3504555 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.51 41.0 3.46e-01 90.7% 63.7%
3552232 377.1.1.6 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e 0.51 40.0 2.94e-01 95.3% 49.0%
4504547 377.1.1.6 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e 0.51 39.0 2.72e-01 95.3% 36.8%
3718361 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 40.0 2.53e-01 100.0% 26.1%
3711634 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.51 40.0 2.42e-01 95.3% 22.7%
5012286 284.4.1.1 ↗ a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain › FKBP26_IF 0.50 40.0 3.60e-01 88.4% 95.0%
3244921 389.1.1.9 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF_2 0.50 33.0 3.44e-01 97.7% 72.5%
4950483 2002.1.1.52 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Peptidase_U32 0.50 40.0 2.52e-01 97.7% 79.6%