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KC348599.1__AGF87401.1__phi30c_0057__00057
Bact-VirKC348599.1__AGF87401.1__phi30c_0057__00057
Identity
- Accession:
- KC348599 ↗
- Kingdom:
- phage
Quality
83.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-44
Domain cluster:
representative
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3u9jA00 | 1.20.120.520 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › nmb1532 protein domain like | 0.91 | 82.0 | 5.38e-01 | 100.0% | 26.8% |
| 1m62A00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.79 | 66.0 | 5.36e-01 | 100.0% | 48.3% |
| 2xkoC02 | 6.10.250.870 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.79 | 59.0 | 6.10e-01 | 100.0% | 97.3% |
| 2gv9A05 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.78 | 66.0 | 6.04e-01 | 100.0% | 72.9% |
| 3fxdC00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.78 | 64.0 | 6.15e-01 | 100.0% | 80.0% |
| 4b94A00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.76 | 64.0 | 4.43e-01 | 97.6% | 28.4% |
| 7k18A01 | 1.20.120.350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C | 0.76 | 63.0 | 4.50e-01 | 100.0% | 34.3% |
| 2db7A01 | 6.10.250.980 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.75 | 61.0 | 5.77e-01 | 97.6% | 88.7% |
| 2pusA02 | 1.10.287.540 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.74 | 64.0 | 5.94e-01 | 97.6% | 90.6% |
| 1sz9C00 | 1.25.40.90 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.73 | 59.0 | 4.18e-01 | 100.0% | 27.9% |
| 7b9cA02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.72 | 58.0 | 3.42e-01 | 97.6% | 10.4% |
| 7nc3F01 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.71 | 56.0 | 4.32e-01 | 100.0% | 55.3% |
| 2kwhA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.70 | 58.0 | 5.40e-01 | 100.0% | 75.0% |
| 8jx6A02 | 2.30.30.780 | Mainly Beta › Roll › SH3 type barrels. › | 0.70 | 55.0 | 4.27e-01 | 100.0% | 37.9% |
| 1hr5A00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.70 | 58.0 | 5.64e-01 | 97.6% | 91.7% |
| 4b7yD00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.69 | 57.0 | 4.52e-01 | 100.0% | 43.3% |
| 1zymA02 | 1.10.274.10 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › PtsI, HPr-binding domain | 0.69 | 60.0 | 4.29e-01 | 100.0% | 81.0% |
| 4u1cA01 | 4.10.860.10 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain | 0.68 | 53.0 | 5.11e-01 | 100.0% | 82.7% |
| 2rp4A00 | 6.10.280.60 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain | 0.68 | 58.0 | 4.95e-01 | 100.0% | 62.0% |
| 2ndpA00 | 4.10.520.10 | Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins | 0.68 | 45.0 | 3.42e-01 | 88.1% | 29.3% |
| 2cazC00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.66 | 51.0 | 4.73e-01 | 100.0% | 64.1% |
| 2y4tA02 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.65 | 51.0 | 4.95e-01 | 100.0% | 80.8% |
| 1rsoA01 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.65 | 51.0 | 4.92e-01 | 97.6% | 84.3% |
| 4uzzB00 | 6.10.250.2800 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.65 | 52.0 | 4.64e-01 | 95.2% | 87.7% |
| 2hoqA02 | 1.10.150.520 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.64 | 51.0 | 4.11e-01 | 97.6% | 45.6% |
| 1dd9A03 | 1.20.50.20 | Mainly Alpha › Up-down Bundle › Pheromone ER-1 › DnaG, RNA polymerase domain, helical bundle | 0.61 | 47.0 | 4.39e-01 | 100.0% | 67.8% |
| 1bh9B00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.59 | 54.0 | 4.15e-01 | 100.0% | 51.7% |
| 1t16A00 | 2.40.160.60 | Mainly Beta › Beta Barrel › Porin › Outer membrane protein transport protein (OMPP1/FadL/TodX) | 0.58 | 48.0 | 2.82e-01 | 100.0% | 18.3% |
| 3euwA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.58 | 45.0 | 2.90e-01 | 88.1% | 27.2% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3446909 | 6061.1.1.0 ↗ | alpha arrays › Eukaryotic translation initiation factor 3 subunit 1 › Eukaryotic translation initiation factor 3 subunit 1 › Eukaryotic translation initiation factor 3 subunit 1 | 0.84 | 69.0 | 5.55e-01 | 100.0% | 47.1% |
| 3277002 | 3252.1.1.0 ↗ | alpha arrays › SHQ1 C-terminal domain-like › SHQ1 C-terminal domain › SHQ1 C-terminal domain | 0.84 | 73.0 | 4.49e-01 | 100.0% | 17.6% |
| 3757869 | 4006.1.1.0 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain | 0.80 | 68.0 | 5.29e-01 | 100.0% | 45.3% |
| 3708019 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.80 | 68.0 | 5.01e-01 | 100.0% | 37.4% |
| 4154807 | 3877.1.1.1 ↗ | alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC › 60KD_IMP | 0.79 | 70.0 | 4.21e-01 | 100.0% | 15.6% |
| 3742273 | 109.6.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › Ras GEF › Ras GEF › RasGEF,RasGEF_N | 0.79 | 65.0 | 3.72e-01 | 100.0% | 9.3% |
| 4056724 | 192.6.1.0 ↗ | alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain | 0.79 | 68.0 | 6.70e-01 | 97.6% | 97.8% |
| 5074150 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.79 | 64.0 | 5.89e-01 | 100.0% | 70.9% |
| 4819006 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.78 | 68.0 | 4.11e-01 | 100.0% | 15.8% |
| 3479529 | 604.3.1.1 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG | 0.77 | 62.0 | 4.97e-01 | 100.0% | 45.3% |
| 3235794 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.76 | 65.0 | 4.55e-01 | 100.0% | 32.9% |
| 3594310 | 604.12.1.2 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Vta1 | 0.76 | 64.0 | 5.28e-01 | 100.0% | 52.5% |
| 3629808 | 3291.1.1.130 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › CHDCT2 | 0.74 | 62.0 | 4.99e-01 | 100.0% | 46.7% |
| 3250262 | 2485.1.1.1 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin | 0.74 | 51.0 | 3.37e-01 | 95.2% | 17.7% |
| 3486453 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.72 | 62.0 | 4.69e-01 | 100.0% | 47.6% |
| 3174946 | 109.4.1.465 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SPO22 | 0.72 | 61.0 | 4.11e-01 | 100.0% | 29.4% |
| 4614725 | 3826.1.1.0 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) | 0.71 | 56.0 | 4.69e-01 | 100.0% | 50.6% |
| 4444792 | 513.1.1.1 ↗ | a+b two layers › Obg GTP-binding protein C-terminal domain-like › Obg GTP-binding protein C-terminal domain › Obg GTP-binding protein C-terminal domain › DUF1967 | 0.70 | 57.0 | 4.82e-01 | 88.1% | 71.0% |
| 4505937 | 513.1.1.1 ↗ | a+b two layers › Obg GTP-binding protein C-terminal domain-like › Obg GTP-binding protein C-terminal domain › Obg GTP-binding protein C-terminal domain › DUF1967 | 0.69 | 57.0 | 4.60e-01 | 95.2% | 62.4% |
| 3175548 | 524.1.1.1 ↗ | alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p › RabGAP-TBC | 0.67 | 55.0 | 3.67e-01 | 97.6% | 23.9% |
| 5009774 | 7565.1.1.1 ↗ | a/b three-layered sandwiches › Resolvase-like › Resolvase-like › Resolvase-like › Resolvase | 0.66 | 51.0 | 3.46e-01 | 97.6% | 23.3% |
| 3608253 | 633.16.1.0 ↗ | alpha bundles › Bromodomain-like › PMT helical bundle domain-like › PMT helical bundle domain-like | 0.65 | 50.0 | 4.69e-01 | 92.9% | 67.3% |
| 4987617 | 301.6.1.3 ↗ | a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like › CetZ_C | 0.63 | 51.0 | 3.57e-01 | 97.6% | 58.8% |