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KC348600.1__AGF87427.1__phi5218_0016__00016
Bact-VirKC348600.1__AGF87427.1__phi5218_0016__00016
Identity
- Accession:
- KC348600 ↗
- Kingdom:
- phage
Quality
61.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 35-51_257-374
D2
medium
residues 52-166_228-256
Domain cluster:
rep: OL774871.1__UJD17842.1__MissB1_0017__00017__D63-187
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3b9wA00 | 1.10.3430.10 | Mainly Alpha › Orthogonal Bundle › Ammonium transporter fold › Ammonium transporter AmtB like domains | 0.64 | 46.0 | 3.45e-01 | 73.6% | 79.0% |
| 8hixR01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.60 | 44.0 | 3.59e-01 | 75.7% | 64.4% |
| 4ip8A00 | 1.10.132.110 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Serum amyloid A protein | 0.60 | 27.0 | 3.14e-01 | 96.5% | 55.2% |
| 1wteB01 | 1.10.3250.10 | Mainly Alpha › Orthogonal Bundle › type ii restriction endonuclease, domain 1 › type ii restriction endonuclease, domain 1 | 0.59 | 31.0 | 3.17e-01 | 93.8% | 49.0% |
| 4nqfA00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.57 | 33.0 | 3.31e-01 | 95.1% | 53.1% |
| 4mbsA00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.57 | 41.0 | 3.20e-01 | 75.0% | 53.8% |
| 2ahoB02 | 1.10.150.190 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Translation initiation factor 2; subunit 1; domain 2 | 0.57 | 32.0 | 3.96e-01 | 70.8% | 87.9% |
| 1urvA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.55 | 29.0 | 2.83e-01 | 93.1% | 44.8% |
| 6fmhB01 | 1.10.3160.10 | Mainly Alpha › Orthogonal Bundle › Bbcrasp-1 › Bbcrasp-1 | 0.54 | 38.0 | 3.58e-01 | 70.1% | 83.1% |
| 6k41R00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.53 | 45.0 | 3.82e-01 | 93.1% | 90.9% |
| 4i4cB00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.53 | 40.0 | 2.97e-01 | 79.2% | 99.0% |
| 6fhoA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.53 | 37.0 | 3.34e-01 | 72.2% | 86.2% |
| 6l1xA01 | 1.20.210.10 | Mainly Alpha › Up-down Bundle › Cytochrome C Oxidase; Chain A › Cytochrome c oxidase-like, subunit I domain | 0.53 | 40.0 | 2.75e-01 | 79.2% | 97.5% |
| 4ioeA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.52 | 27.0 | 3.39e-01 | 95.1% | 82.8% |
| 3emlA01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.52 | 43.0 | 3.51e-01 | 92.4% | 88.9% |
| 5tgzA01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.52 | 45.0 | 3.60e-01 | 95.8% | 86.6% |
| 4xt1A00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.51 | 42.0 | 3.41e-01 | 91.0% | 84.9% |
| 8ek4A01 | 1.20.120.20 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein | 0.50 | 27.0 | 2.88e-01 | 93.8% | 55.6% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3963765 | 159.1.2.5 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › TMP_3 | 0.78 | 67.0 | 6.07e-01 | 90.3% | 98.9% |
| 4679374 | 1075.5.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › MatE | 0.57 | 47.0 | 3.96e-01 | 86.8% | 93.2% |
| 4935333 | 3755.3.1.637 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF7121 | 0.55 | 27.0 | 2.75e-01 | 96.5% | 44.7% |
| 3996264 | 3755.4.1.0 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain | 0.54 | 27.0 | 2.62e-01 | 96.5% | 39.4% |
| 3971188 | 5001.1.1.248 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › PepSY_TM | 0.54 | 35.0 | 3.47e-01 | 99.3% | 62.0% |
| 4959924 | 1075.1.1.3 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane_2 | 0.53 | 40.0 | 3.31e-01 | 79.9% | 76.0% |
| 4958599 | 5065.1.1.1 ↗ | alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › ABC-3 | 0.53 | 46.0 | 3.78e-01 | 97.2% | 82.2% |
| 4031283 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.52 | 27.0 | 2.76e-01 | 95.8% | 46.7% |
| 5045018 | 5065.1.1.1 ↗ | alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › ABC-3 | 0.52 | 46.0 | 3.71e-01 | 99.3% | 84.6% |
| 3685798 | 632.25.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › GBS CAMP factor N-terminal domain › GBS CAMP factor N-terminal domain | 0.51 | 36.0 | 3.44e-01 | 70.8% | 97.6% |
| 3770378 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.51 | 43.0 | 3.43e-01 | 93.1% | 80.0% |
| 3910283 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.51 | 43.0 | 3.35e-01 | 92.4% | 83.4% |
| 3983080 | 5065.1.1.1 ↗ | alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › ABC-3 | 0.50 | 45.0 | 3.65e-01 | 100.0% | 80.7% |
| 4971764 | 3567.1.1.0 ↗ | a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer | 0.50 | 38.0 | 3.35e-01 | 83.3% | 54.6% |
| 4048206 | 5050.1.1.55 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr, MFS_1 | 0.50 | 41.0 | 2.89e-01 | 88.9% | 80.7% |
| 3217875 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.50 | 42.0 | 3.25e-01 | 93.1% | 81.4% |
D3
medium
residues 167-227
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1khcA02 | 1.10.720.50 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › PWWP, helical domain | 0.61 | 46.0 | 4.49e-01 | 82.0% | 84.1% |
| 3cf6E01 | 1.10.8.1240 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.58 | 38.0 | 4.20e-01 | 80.3% | 91.1% |
| 1vt0k00 | 1.10.3230.20 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein yqbg › P22 tail accessory factor (Gp4) | 0.54 | 45.0 | 3.50e-01 | 96.7% | 69.0% |
| 2e62A01 | 6.10.140.420 | Special › Helix non-globular › Helix Hairpins › | 0.54 | 38.0 | 4.11e-01 | 83.6% | 86.5% |
| 4cc9B00 | 1.20.5.4730 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.52 | 41.0 | 3.64e-01 | 90.2% | 71.4% |
| 3nvoB02 | 1.20.58.340 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region | 0.52 | 35.0 | 2.84e-01 | 70.5% | 81.0% |
| 2imsA00 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.51 | 43.0 | 3.19e-01 | 93.4% | 66.9% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3737129 | 101.1.1.21 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 | 0.57 | 38.0 | 3.63e-01 | 70.5% | 65.3% |
| 4027969 | 102.9.1.0 ↗ | alpha arrays › HhH/H2TH › Cdc45 CID domain › Cdc45 CID domain | 0.55 | 44.0 | 3.86e-01 | 90.2% | 80.0% |
| 3738345 | 101.1.2.352 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc5 | 0.55 | 41.0 | 3.87e-01 | 96.7% | 65.3% |
| 4021334 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.54 | 47.0 | 3.23e-01 | 100.0% | 43.5% |
| 185993 | 6026.1.1.1 ↗ | alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain › cwf21 | 0.54 | 38.0 | 3.86e-01 | 83.6% | 73.8% |
| 4111666 | 610.3.1.1 ↗ | alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey | 0.53 | 37.0 | 2.70e-01 | 83.6% | 24.9% |
| 3584819 | 524.1.1.1 ↗ | alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p › RabGAP-TBC | 0.52 | 36.0 | 3.33e-01 | 72.1% | 98.8% |
D4
medium
residues 375-439
D5
medium
residues 440-564