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KC348600.1__AGF87449.1__phi5218_0038__00038

Bact-Vir

KC348600.1__AGF87449.1__phi5218_0038__00038

Identity

Accession:
KC348600 ↗
Kingdom:
phage

Quality

93.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Streptococcus_phage_phi5218

TaxID: 1289597

Cluster

View cluster (42 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 52-129
PDB
Domain cluster: rep: js4906-25-2-S21_Prophage_curated_prodigal-single.1__X__X__00062__D262-324
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF09643.16 best YopX 23.0 9.70e-05 100.0% 57.0%
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2p84A02 2.30.30.290 Mainly Beta › Roll › SH3 type barrels. › YopX-like domains 0.89 72.0 7.45e-01 97.4% 90.4%
2i2lB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.76 59.0 6.32e-01 93.6% 95.6%
4g9mB00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.71 52.0 4.28e-01 78.2% 99.3%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.70 59.0 5.98e-01 93.6% 93.5%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 46.0 4.83e-01 85.9% 76.8%
2eayB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 42.0 4.93e-01 73.1% 100.0%
1f39A00 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.67 50.0 4.59e-01 89.7% 61.4%
4hdoA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 46.0 4.34e-01 71.8% 79.3%
2lg1A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 46.0 4.03e-01 73.1% 73.9%
2eqkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 49.0 5.11e-01 91.0% 86.3%
4bi3A01 3.90.1720.80 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.64 46.0 4.45e-01 88.5% 67.0%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 43.0 4.69e-01 80.8% 85.9%
2dhkA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 43.0 4.03e-01 71.8% 82.0%
1plsA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 44.0 3.93e-01 74.4% 73.5%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 41.0 4.73e-01 82.1% 98.2%
3q39B02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.60 49.0 4.40e-01 88.5% 100.0%
1ntvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 42.0 3.45e-01 74.4% 69.7%
4innA00 2.40.128.520 Mainly Beta › Beta Barrel › Lipocalin › 0.60 53.0 4.33e-01 100.0% 91.1%
1mixA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 40.0 3.86e-01 71.8% 79.6%
2w5eA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.58 35.0 3.66e-01 73.1% 63.5%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 41.0 3.66e-01 74.4% 87.3%
2k2jA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 40.0 3.59e-01 74.4% 80.3%
8ornD01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.57 48.0 3.69e-01 92.3% 92.0%
2kieA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.57 39.0 3.47e-01 73.1% 76.6%
2rceA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.57 43.0 3.89e-01 80.8% 59.4%
1tqzA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 39.0 3.47e-01 74.4% 88.6%
1wgqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 40.0 3.61e-01 74.4% 75.2%
3cp3A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 41.0 3.54e-01 78.2% 90.6%
5z5dA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 44.0 3.39e-01 88.5% 90.5%
4hwmA00 2.40.128.500 Mainly Beta › Beta Barrel › Lipocalin › YedD-like protein 0.56 48.0 4.25e-01 97.4% 91.5%
2jqjA01 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.55 37.0 3.18e-01 70.5% 83.1%
2nr4A01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 41.0 3.49e-01 87.2% 47.4%
3tfmA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 44.0 4.15e-01 91.0% 87.9%
2y7bA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 44.0 3.71e-01 91.0% 83.6%
1yloE02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.53 43.0 4.22e-01 88.5% 83.3%
3i8tA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 40.0 3.38e-01 84.6% 95.0%
5ylyA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 41.0 3.68e-01 87.2% 100.0%
5choF00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 39.0 3.15e-01 82.1% 89.4%
5cvmA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.52 41.0 2.81e-01 89.7% 49.7%
2ou5A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 38.0 2.99e-01 79.5% 80.0%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 40.0 4.11e-01 85.9% 94.4%
4ksnA00 6.20.250.80 Special › Other non-globular › Double Stranded RNA Binding Domain › 0.51 38.0 4.10e-01 76.9% 92.3%
2djhA00 3.30.2310.30 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › Colicin E5 C-terminal ribonuclease domain (CRD) 0.51 36.0 3.45e-01 74.4% 66.7%
2gpjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 41.0 3.84e-01 89.7% 79.0%
3mepA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 40.0 3.24e-01 91.0% 97.2%
2hq9B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 37.0 3.15e-01 79.5% 48.2%
5e6tA02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.51 39.0 3.78e-01 87.2% 100.0%
3i3tA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.50 39.0 2.71e-01 87.2% 45.5%
2eixA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.50 39.0 3.59e-01 85.9% 97.2%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3900190 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.71 51.0 4.24e-01 74.4% 66.4%
4071824 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.71 60.0 6.14e-01 93.6% 96.0%
3828348 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 47.0 5.10e-01 80.8% 86.2%
3359784 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.68 47.0 5.07e-01 80.8% 86.2%
3931993 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 48.0 5.34e-01 97.4% 98.3%
3707347 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 44.0 5.04e-01 87.2% 96.4%
3689684 220.1.1.113 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_11 0.67 47.0 4.05e-01 74.4% 76.8%
3890922 220.1.1.132 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › KRIT1_FRMD8_FERM_C 0.66 47.0 4.23e-01 73.1% 74.3%
5029031 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 47.0 5.21e-01 85.9% 98.3%
3777243 220.1.1.161 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26659 0.65 46.0 3.82e-01 73.1% 59.3%
3903728 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 46.0 4.27e-01 74.4% 79.0%
4023246 6.1.1.0 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil 0.65 54.0 4.22e-01 89.7% 100.0%
3509523 220.1.1.167 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF29707 0.64 43.0 3.62e-01 70.5% 54.3%
3563954 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.64 45.0 3.66e-01 74.4% 68.7%
3587958 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 45.0 4.38e-01 75.6% 88.9%
3236689 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 43.0 4.91e-01 76.9% 100.0%
3248246 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.63 45.0 3.80e-01 74.4% 63.8%
3913687 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.63 49.0 4.71e-01 92.3% 73.3%
3516854 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 44.0 3.89e-01 73.1% 75.7%
3328891 4.1.1.296 ↗ beta barrels › SH3 › SH3 › SH3 › TDBD 0.63 42.0 4.57e-01 70.5% 100.0%
4007999 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.63 52.0 4.33e-01 91.0% 84.4%
3057477 220.1.1.146 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_NDK7_N 0.62 46.0 4.38e-01 78.2% 83.5%
4646593 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.62 51.0 4.29e-01 91.0% 85.2%
3935130 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 41.0 4.74e-01 87.2% 98.2%
3535499 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 44.0 3.92e-01 74.4% 77.3%
3926623 4184.1.1.0 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.61 47.0 4.89e-01 83.3% 91.8%
3635006 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.60 42.0 3.32e-01 74.4% 73.9%
4011997 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 42.0 3.38e-01 74.4% 78.2%
3276134 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.60 42.0 3.69e-01 74.4% 68.8%
4930890 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.60 46.0 4.68e-01 94.9% 85.3%
4301851 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 48.0 3.94e-01 88.5% 70.0%
3669492 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.59 47.0 3.89e-01 88.5% 48.6%
3614421 220.1.1.236 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_27 0.59 48.0 4.48e-01 91.0% 81.0%
134018 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.58 40.0 3.19e-01 82.1% 34.6%
3252821 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 48.0 4.33e-01 91.0% 76.4%
5057900 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.58 48.0 3.95e-01 91.0% 82.1%
3429682 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 45.0 4.60e-01 85.9% 86.7%
4565886 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 47.0 3.93e-01 91.0% 73.2%
5016546 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.57 46.0 4.72e-01 87.2% 93.3%
3715939 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.57 47.0 3.51e-01 92.3% 50.7%
3279607 9.3.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like 0.56 46.0 4.26e-01 89.7% 100.0%
2532980 219.1.1.53 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Vasohibin 0.56 42.0 3.03e-01 82.1% 34.3%
3762030 219.1.1.14 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Josephin 0.56 44.0 3.83e-01 88.5% 63.2%
3273564 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 45.0 4.38e-01 91.0% 83.3%
5029577 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.55 37.0 4.04e-01 89.7% 85.7%
3213121 4184.1.1.0 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.55 42.0 4.28e-01 83.3% 92.0%
21201 1.1.5.17 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N 0.55 41.0 3.53e-01 87.2% 48.5%
3933782 4184.1.1.0 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.55 44.0 4.30e-01 88.5% 89.4%
3738602 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.55 46.0 2.90e-01 96.2% 34.4%
3912023 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.53 43.0 2.94e-01 91.0% 50.3%
4467867 3784.1.1.0 ↗ a+b two layers › Putative lipoprotein CPF_1278-related › Putative lipoprotein CPF_1278-related › Putative lipoprotein CPF_1278-related 0.52 41.0 3.45e-01 88.5% 67.6%
3953421 1.1.5.31 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.52 38.0 3.20e-01 78.2% 85.7%
4983682 1.1.5.17 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N 0.52 41.0 3.44e-01 87.2% 76.4%
4795566 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.52 38.0 4.02e-01 91.0% 92.5%
4982411 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.52 38.0 3.25e-01 89.7% 46.9%
4319764 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.52 41.0 3.66e-01 85.9% 66.4%
4979014 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.51 37.0 3.15e-01 78.2% 45.9%
2429452 1.1.5.31 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.51 37.0 3.21e-01 78.2% 86.4%
3283546 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.51 38.0 3.13e-01 79.5% 45.5%
5012403 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 40.0 3.31e-01 92.3% 88.5%
5011536 1.1.5.17 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N 0.50 40.0 3.43e-01 88.5% 100.0%
3890729 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.50 40.0 2.63e-01 89.7% 43.4%