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KC348600.1__AGF87452.1__phi5218_0041__00041

Bact-Vir

KC348600.1__AGF87452.1__phi5218_0041__00041

Identity

Accession:
KC348600 ↗
Kingdom:
phage

Quality

79.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Streptococcus_phage_phi5218

TaxID: 1289597

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-48
PDB
Domain cluster: representative
CATH (78)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.79 68.0 5.72e-01 100.0% 73.3%
1mk1A00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.77 56.0 3.59e-01 76.7% 96.8%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.77 67.0 6.52e-01 97.7% 97.9%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 66.0 6.08e-01 100.0% 82.5%
2e6zA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.75 64.0 5.85e-01 100.0% 76.3%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 64.0 5.78e-01 100.0% 89.8%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.73 64.0 6.03e-01 100.0% 82.7%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.73 63.0 5.50e-01 100.0% 73.1%
1g29102 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.73 54.0 5.38e-01 81.4% 82.2%
5bncA02 3.20.180.10 Alpha Beta › Alpha-Beta Barrel › Split barrel-like › PNP-oxidase-like 0.73 63.0 4.91e-01 97.7% 68.8%
1t9hA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.73 55.0 4.73e-01 86.0% 90.4%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.73 60.0 5.93e-01 97.7% 87.0%
1pxfA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.73 52.0 3.93e-01 79.1% 37.8%
5kvsA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.72 55.0 3.76e-01 86.0% 32.1%
2qa1A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.72 59.0 3.60e-01 97.7% 49.2%
1vq8Q00 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.72 60.0 4.77e-01 100.0% 57.9%
1ebdA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.71 58.0 4.32e-01 97.7% 75.2%
5hr9A01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.71 53.0 4.04e-01 83.7% 84.1%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 62.0 5.22e-01 100.0% 58.9%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 60.0 5.70e-01 100.0% 92.5%
5yjlC02 3.20.180.10 Alpha Beta › Alpha-Beta Barrel › Split barrel-like › PNP-oxidase-like 0.70 60.0 4.46e-01 97.7% 58.6%
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 59.0 5.29e-01 100.0% 68.3%
1fr3A00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.69 50.0 4.46e-01 81.4% 59.7%
3rn5A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.69 52.0 4.18e-01 86.0% 79.3%
2ivdB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.69 56.0 3.88e-01 97.7% 51.2%
4c12A02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.69 57.0 3.59e-01 95.3% 80.3%
4qdiA02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.68 55.0 3.52e-01 95.3% 75.1%
4uoiC00 3.30.160.890 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Hepatitis C virus envelope glycoprotein E1, chain C 0.68 49.0 4.64e-01 76.7% 72.5%
2ffsA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.68 54.0 3.78e-01 90.7% 29.7%
4mchA00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.67 50.0 3.18e-01 83.7% 16.0%
4bubA02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.67 54.0 3.45e-01 95.3% 80.0%
3ulbA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 50.0 4.25e-01 90.7% 89.2%
8f5dA05 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.66 53.0 3.43e-01 95.3% 79.2%
1y56A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.66 53.0 3.44e-01 97.7% 45.9%
6l4qB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.66 49.0 3.51e-01 83.7% 60.7%
6fopA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.66 52.0 3.36e-01 93.0% 35.8%
4l5tB02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 48.0 3.91e-01 83.7% 44.0%
7byjA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 51.0 4.13e-01 95.3% 89.5%
2m7oA00 3.10.450.400 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Uncharacterised protein PF15513, DUF4651 0.65 48.0 4.29e-01 88.4% 65.7%
1bf3A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.64 50.0 3.27e-01 97.7% 53.8%
3ovcA01 3.30.200.150 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › 0.64 51.0 4.43e-01 93.0% 76.1%
4fnvA02 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.64 48.0 2.98e-01 83.7% 53.5%
2qmiA02 2.40.128.210 Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain 0.64 49.0 3.87e-01 88.4% 69.0%
4l5rC02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 46.0 3.87e-01 86.0% 82.0%
2gk4A00 3.40.50.10300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CoaB-like 0.64 50.0 3.24e-01 93.0% 82.5%
2r5vA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.63 48.0 3.29e-01 90.7% 24.0%
3zl8A02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.63 51.0 3.29e-01 95.3% 73.5%
2jaeA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.63 50.0 3.47e-01 100.0% 47.6%
2grgA01 3.40.1840.10 Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like 0.63 49.0 4.13e-01 93.0% 96.4%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 49.0 4.50e-01 93.0% 73.8%
5upiA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.63 49.0 3.31e-01 93.0% 47.9%
2wc7A02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.62 43.0 3.58e-01 72.1% 39.2%
1azpA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.61 48.0 4.43e-01 100.0% 80.3%
2xkoC01 2.30.30.660 Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3539) 0.61 51.0 4.99e-01 95.3% 85.4%
1t6lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.61 47.0 3.02e-01 93.0% 44.2%
2yt4A03 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.61 47.0 3.66e-01 90.7% 59.6%
3frnA01 3.10.129.70 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › 0.60 46.0 3.38e-01 93.0% 44.6%
3b77A01 2.30.29.50 Mainly Beta › Roll › PH-domain like › Bacterial Pleckstrin homology domain 0.60 43.0 3.45e-01 83.7% 97.0%
2ablA02 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.59 41.0 3.30e-01 76.7% 55.7%
2af5A01 2.40.128.160 Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) 0.58 46.0 4.41e-01 100.0% 75.9%
6j8yC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.58 43.0 2.77e-01 88.4% 92.2%
1ospO01 2.40.128.160 Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) 0.57 44.0 3.53e-01 100.0% 39.0%
1oxxK02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 40.0 4.04e-01 81.4% 82.2%
2ml5A00 3.10.450.410 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 42.0 2.99e-01 86.0% 67.1%
3mx7A00 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.57 41.0 3.40e-01 83.7% 78.9%
3t0pA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.55 42.0 2.88e-01 95.3% 33.2%
2v7sA00 3.30.2030.20 Alpha Beta › 2-Layer Sandwich › TBP-like › 0.55 39.0 2.79e-01 83.7% 26.0%
4bfiB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 40.0 3.29e-01 83.7% 91.1%
3rc2A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.54 41.0 2.82e-01 88.4% 72.6%
4p78C00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.54 40.0 3.67e-01 93.0% 63.6%
2kjpA01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.53 42.0 3.67e-01 100.0% 94.9%
1o8vA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 38.0 2.92e-01 86.0% 70.7%
1vpkA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.53 42.0 3.14e-01 93.0% 91.7%
2nn5A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 44.0 3.04e-01 100.0% 55.6%
5w7zA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.52 39.0 3.14e-01 95.3% 60.2%
7vljA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.51 40.0 3.36e-01 100.0% 88.2%
2r41A00 3.10.450.150 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › enterococcus faecalis protein 0.51 40.0 3.21e-01 97.7% 70.9%
4fd0A01 2.60.40.3630 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 37.0 3.28e-01 90.7% 72.2%
ECOD (93)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4632710 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.86 64.0 6.31e-01 79.1% 88.9%
3581611 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 62.0 5.87e-01 86.0% 72.0%
3420881 5.1.3.252 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PF27637 0.78 57.0 6.13e-01 79.1% 97.1%
5074039 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 66.0 5.55e-01 100.0% 73.3%
4101502 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.77 66.0 6.22e-01 100.0% 83.3%
3244960 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.77 52.0 4.38e-01 72.1% 41.3%
5060010 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.76 52.0 5.16e-01 72.1% 93.3%
4559371 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 64.0 5.75e-01 100.0% 74.6%
5011500 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.76 65.0 5.04e-01 100.0% 55.0%
4079197 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 64.0 5.24e-01 100.0% 55.3%
3976834 4.1.1.156 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2158 0.76 63.0 6.09e-01 100.0% 84.0%
3941391 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 63.0 5.67e-01 95.3% 71.7%
3474715 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 66.0 5.78e-01 100.0% 66.2%
4954529 3335.1.1.0 ↗ beta barrels › Handle domain in transferrin-binding protein B › Handle domain in transferrin-binding protein B › Handle domain in transferrin-binding protein B 0.75 57.0 5.14e-01 83.7% 98.3%
3485965 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 64.0 5.80e-01 100.0% 75.0%
4058174 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.75 64.0 5.65e-01 100.0% 67.7%
5000522 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.74 51.0 3.21e-01 72.1% 14.4%
4941299 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.74 63.0 5.07e-01 97.7% 61.2%
4946028 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 63.0 5.02e-01 100.0% 61.1%
4177200 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.74 62.0 5.84e-01 100.0% 81.8%
4304764 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.73 59.0 4.35e-01 93.0% 37.0%
5067227 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 61.0 5.05e-01 100.0% 66.3%
4493460 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.72 59.0 4.42e-01 93.0% 39.1%
4620412 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.72 58.0 4.31e-01 93.0% 36.5%
3622846 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.71 62.0 5.97e-01 100.0% 86.0%
4250402 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 57.0 5.68e-01 93.0% 97.8%
5079023 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 60.0 5.93e-01 100.0% 93.3%
4890270 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.70 61.0 5.69e-01 100.0% 79.6%
4652221 2004.1.1.159 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M 0.70 58.0 3.70e-01 95.3% 80.9%
3789432 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.70 56.0 3.20e-01 93.0% 10.5%
4450167 2004.1.1.159 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M 0.69 52.0 3.29e-01 88.4% 74.5%
5042471 2003.1.5.42 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_21 0.68 48.0 2.98e-01 76.7% 16.6%
4096302 2004.1.1.159 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M 0.68 54.0 3.40e-01 93.0% 75.2%
3914746 4.1.1.128 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_4 0.67 59.0 5.04e-01 100.0% 62.9%
3281562 2.4.1.3 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2,OB_MalK 0.67 52.0 3.84e-01 93.0% 34.6%
4963741 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.67 52.0 3.86e-01 93.0% 35.2%
3867672 2.1.1.22 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › HIN 0.67 49.0 4.40e-01 86.0% 60.3%
3458876 2004.1.1.159 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M 0.67 53.0 3.37e-01 95.3% 78.0%
4816818 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.66 55.0 5.41e-01 100.0% 91.5%
2755261 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.66 53.0 3.60e-01 97.7% 88.6%
4990115 318.1.1.0 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 0.66 50.0 4.09e-01 88.4% 51.1%
5065528 330.7.1.0 ↗ a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain 0.66 49.0 4.28e-01 93.0% 51.4%
3692799 2003.1.2.65 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like, Pyr_redox_3 0.65 52.0 2.96e-01 97.7% 23.8%
4051997 2.4.1.3 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2,OB_MalK 0.65 51.0 3.82e-01 93.0% 36.7%
3797523 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.65 50.0 3.65e-01 88.4% 50.0%
3967510 3454.1.1.0 ↗ beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like 0.64 53.0 4.54e-01 93.0% 95.7%
4215371 318.1.1.1 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.64 48.0 3.98e-01 88.4% 50.0%
4985279 319.1.1.4 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › ArsA_HSP20 0.64 51.0 4.28e-01 93.0% 77.5%
3549045 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.64 49.0 3.81e-01 90.7% 61.8%
5005914 318.1.1.1 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.64 48.0 4.03e-01 88.4% 52.9%
1567587 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.64 48.0 4.24e-01 88.4% 62.0%
4050765 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.63 50.0 3.83e-01 100.0% 98.3%
None — 0.63 50.0 3.05e-01 100.0% 35.2%
4407599 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.63 50.0 3.73e-01 95.3% 95.2%
3514660 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.62 44.0 3.65e-01 81.4% 55.6%
5060093 330.7.1.2 ↗ a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin 0.62 49.0 4.17e-01 90.7% 52.7%
4949158 244.2.1.1 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › Pyr_redox_dim 0.61 49.0 3.18e-01 97.7% 39.2%
3965157 2003.1.2.58 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox, Pyr_redox_2 0.61 49.0 3.31e-01 97.7% 47.4%
3797707 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 47.0 3.51e-01 95.3% 61.5%
4940152 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.61 47.0 3.63e-01 93.0% 36.5%
3380327 5.1.10.14 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed › WD40_RFWD3 0.61 47.0 3.76e-01 93.0% 77.0%
3698212 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.61 51.0 3.07e-01 100.0% 31.1%
4485741 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.61 47.0 2.64e-01 93.0% 8.5%
3479661 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.61 45.0 3.54e-01 88.4% 57.3%
3925738 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.60 46.0 3.55e-01 90.7% 61.8%
185264 222.1.1.19 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › FlgA_HD-like 0.60 46.0 4.13e-01 93.0% 89.9%
5041490 206.1.1.11 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.60 48.0 2.93e-01 97.7% 27.6%
4552798 3699.1.1.0 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain 0.59 40.0 4.18e-01 86.0% 77.5%
3614237 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.59 45.0 3.37e-01 93.0% 90.4%
3195088 2006.1.1.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.59 48.0 2.70e-01 100.0% 38.3%
3961571 3699.1.1.3 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synth 0.59 43.0 3.27e-01 90.7% 30.0%
None — 0.59 48.0 2.74e-01 100.0% 39.8%
3962288 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.59 45.0 3.34e-01 90.7% 75.4%
3209967 10.13.1.0 ↗ beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A 0.58 45.0 3.19e-01 100.0% 88.1%
4031110 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 48.0 3.56e-01 97.7% 80.8%
4056117 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.58 45.0 4.20e-01 100.0% 84.6%
3510681 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 47.0 4.10e-01 100.0% 88.0%
4958282 12.3.1.14 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Hepar_II_III 0.58 45.0 2.70e-01 88.4% 24.6%
4973804 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 46.0 4.04e-01 100.0% 76.0%
5004981 3335.1.1.0 ↗ beta barrels › Handle domain in transferrin-binding protein B › Handle domain in transferrin-binding protein B › Handle domain in transferrin-binding protein B 0.58 42.0 3.85e-01 86.0% 92.3%
3405797 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.58 43.0 3.59e-01 93.0% 65.3%
3742121 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 45.0 4.60e-01 90.7% 97.5%
5012387 2.2.1.0 ↗ beta barrels › OB-fold › Bacterial enterotoxins › Bacterial enterotoxins 0.57 42.0 3.51e-01 81.4% 55.0%
3633647 896.1.1.0 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.57 44.0 3.99e-01 95.3% 86.2%
3591534 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.56 40.0 3.06e-01 83.7% 30.4%
5002092 283.2.1.0 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like 0.56 41.0 3.46e-01 88.4% 87.8%
3303112 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.55 44.0 3.36e-01 93.0% 50.0%
3789625 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.54 42.0 3.11e-01 93.0% 85.2%
4188283 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.53 41.0 3.54e-01 93.0% 76.2%
3730875 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.52 39.0 3.24e-01 90.7% 90.5%
3801806 3459.1.1.3 ↗ beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › DUF868 0.51 42.0 3.19e-01 100.0% 78.3%
3405538 219.1.1.111 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core, Rad4 0.50 37.0 2.36e-01 88.4% 28.1%
3721374 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.50 38.0 3.15e-01 95.3% 68.0%
D2 high residues 58-113
PDB
Domain cluster: rep: NC_070924.1__YP_010664748.1__PQB26_gp22__00022__D43-100
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF07852.17 best DUF1642 31.6 3.10e-07 100.0% 45.6%
D3 high residues 118-179
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6h8oA00 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.67 47.0 4.05e-01 72.6% 78.9%
3s7iB01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.58 44.0 3.18e-01 82.3% 72.4%
2jveA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.58 40.0 3.89e-01 74.2% 88.7%
2jqjA01 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.57 41.0 3.26e-01 77.4% 87.7%
1wlfA01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.56 40.0 3.70e-01 77.4% 100.0%
5ja1B00 3.90.820.10 Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id 0.55 38.0 3.77e-01 74.2% 75.8%
4e6xB00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.54 46.0 2.99e-01 100.0% 76.7%
1dfxA00 2.60.40.730 Mainly Beta › Sandwich › Immunoglobulin-like › SOR catalytic domain 0.54 40.0 3.39e-01 87.1% 97.6%
3loiA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 42.0 3.25e-01 93.5% 90.0%
2nutB04 3.40.50.410 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain 0.53 46.0 3.14e-01 100.0% 59.3%
4hslA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 37.0 2.77e-01 75.8% 48.8%
4h32A02 3.90.209.20 Alpha Beta › Alpha-Beta Complex › Hemagglutinin (Ha1 Chain); Chain: A; domain 1 › Haemagglutinin, alpha/beta domain, HA1 chain 0.52 41.0 2.83e-01 87.1% 85.9%
8h68A01 2.60.120.590 Mainly Beta › Sandwich › Jelly Rolls › Alpha-ketoglutarate-dependent dioxygenase AlkB-like 0.52 45.0 3.14e-01 100.0% 33.2%
4iykA01 2.60.40.1120 Mainly Beta › Sandwich › Immunoglobulin-like › Carboxypeptidase-like, regulatory domain 0.51 37.0 3.35e-01 95.2% 53.3%
2xskA00 2.60.40.2420 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 42.0 3.60e-01 88.7% 65.3%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2391478 304.55.1.5 ↗ a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Viral_Rep 0.67 47.0 4.05e-01 72.6% 78.9%
3996928 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.60 43.0 4.24e-01 75.8% 95.4%
5030978 10.12.1.34 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › GPI 0.57 45.0 3.32e-01 90.3% 77.2%
3248947 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.54 40.0 3.86e-01 82.3% 90.7%
5057683 2484.1.1.38 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2 0.54 39.0 3.25e-01 79.0% 82.4%
4255735 101.1.9.98 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF4004 0.54 47.0 3.76e-01 98.4% 59.2%
4936812 2484.1.1.49 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hydant_A_N 0.52 37.0 3.11e-01 79.0% 92.8%
3387994 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.52 35.0 3.34e-01 72.6% 80.0%
3892160 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 44.0 3.96e-01 100.0% 91.1%
3241311 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.50 39.0 2.91e-01 91.9% 66.8%