←Back to structures

KC460990.1__AGN89462.1__Eta_0016__00016

Bact-Vir

KC460990.1__AGN89462.1__Eta_0016__00016

Identity

Accession:
KC460990 ↗
Kingdom:
phage

Quality

91.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Sarkviridae› Seretavirus› Serratia_phage_Eta

TaxID: 1282995

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-69
PDB
Domain cluster: rep: ON602758.1__UVX31569.1__M12a_00058__00058__D4-73
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2p84A02 2.30.30.290 Mainly Beta › Roll › SH3 type barrels. › YopX-like domains 0.70 49.0 4.76e-01 73.1% 68.5%
2j7qA00 3.90.70.120 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.68 53.0 3.63e-01 85.1% 76.6%
1ljoA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 46.0 4.51e-01 73.1% 81.3%
1fhoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 44.0 3.73e-01 74.6% 76.5%
1yzbA01 3.90.70.40 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.61 47.0 3.89e-01 85.1% 87.9%
3k2zA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.59 51.0 4.32e-01 100.0% 75.6%
4r3dA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.58 52.0 4.09e-01 100.0% 48.2%
1txqA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.58 46.0 4.52e-01 88.1% 100.0%
1jheA00 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.58 50.0 4.16e-01 100.0% 72.6%
3b21A00 3.90.70.140 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.58 45.0 3.29e-01 86.6% 68.2%
3ottB02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 45.0 2.98e-01 89.6% 35.8%
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 41.0 3.61e-01 79.1% 89.9%
5d3xB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 40.0 3.22e-01 74.6% 63.8%
2rgnB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 40.0 3.33e-01 74.6% 69.1%
1x2jA00 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.57 47.0 3.15e-01 95.5% 83.1%
3kyfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 40.0 3.40e-01 76.1% 49.1%
2qc5A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 45.0 3.02e-01 92.5% 71.5%
5xpyA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 39.0 3.41e-01 74.6% 70.4%
5xbfA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 39.0 3.64e-01 74.6% 84.1%
3bwsA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 44.0 2.89e-01 91.0% 60.1%
2p4oA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.55 45.0 3.03e-01 94.0% 92.5%
2dg1C00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.55 43.0 2.86e-01 89.6% 43.4%
1a3wB03 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.55 36.0 3.19e-01 71.6% 46.4%
3v9fA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 45.0 3.07e-01 98.5% 92.1%
4o5vA03 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.54 43.0 4.20e-01 89.6% 97.4%
3x29A00 1.20.140.150 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › 0.53 38.0 2.91e-01 77.6% 76.5%
5ejrA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 37.0 3.59e-01 76.1% 92.5%
3zugB02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.51 42.0 3.37e-01 94.0% 70.4%
7oc3A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.50 38.0 3.51e-01 85.1% 84.8%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4938404 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 46.0 5.01e-01 73.1% 85.5%
3826272 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.68 55.0 3.47e-01 88.1% 88.7%
4982334 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 47.0 5.12e-01 73.1% 89.1%
478 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.67 46.0 4.51e-01 73.1% 81.3%
4195869 4.1.1.60 ↗ beta barrels › SH3 › SH3 › SH3 › YccV-like 0.67 47.0 3.73e-01 74.6% 65.7%
3399079 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 45.0 3.82e-01 71.6% 64.5%
3290662 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.65 52.0 4.22e-01 88.1% 96.2%
4940356 219.1.1.97 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CEPT76_peptidase 0.64 53.0 3.87e-01 92.5% 81.1%
4965523 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 43.0 4.65e-01 71.6% 94.5%
3635131 220.1.1.129 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Swc3 0.62 45.0 3.42e-01 77.6% 53.6%
3890147 633.23.1.33 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › PMP22_Claudin, GSG-1 0.61 44.0 3.16e-01 77.6% 66.2%
4627221 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.61 44.0 4.47e-01 89.6% 78.5%
3627627 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.61 43.0 3.36e-01 74.6% 69.7%
3496180 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 42.0 3.43e-01 73.1% 62.3%
3890750 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 42.0 3.89e-01 74.6% 86.7%
3973676 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.60 52.0 4.31e-01 100.0% 72.6%
3609378 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.59 41.0 3.75e-01 74.6% 88.4%
4024144 220.1.1.44 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › POB3_N 0.59 40.0 3.53e-01 71.6% 76.2%
4259069 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 50.0 3.63e-01 98.5% 48.0%
286929 219.1.1.14 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Josephin 0.58 44.0 3.28e-01 85.1% 82.1%
3916384 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.57 41.0 3.34e-01 76.1% 76.9%
3936469 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 44.0 4.03e-01 88.1% 66.7%
3236058 4184.1.1.2 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.56 42.0 3.90e-01 92.5% 64.7%
3929366 220.1.1.7 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.56 39.0 3.48e-01 76.1% 74.3%
4328609 5.1.4.35 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase 0.55 46.0 2.97e-01 95.5% 54.5%
3365706 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.54 38.0 2.64e-01 74.6% 99.6%
3435896 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.53 41.0 2.74e-01 86.6% 97.5%
3173787 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 37.0 3.14e-01 76.1% 80.0%
3455086 650.1.1.7 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › Zn_ribbon_20 0.53 34.0 3.88e-01 94.0% 97.8%
3764969 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 37.0 3.34e-01 77.6% 85.6%
3926623 4184.1.1.0 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.52 45.0 4.40e-01 100.0% 97.3%
5025364 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.51 39.0 3.85e-01 92.5% 78.7%
3559578 633.23.1.1 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › PMP22_Claudin 0.51 36.0 2.63e-01 76.1% 66.3%
D2 medium residues 85-171
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 42.0 4.90e-01 86.2% 84.1%
5f3yA05 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 42.0 4.38e-01 70.1% 100.0%
3pvlA05 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 41.0 4.29e-01 70.1% 100.0%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 44.0 4.34e-01 88.5% 91.7%
1xkiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 36.0 3.24e-01 75.9% 91.4%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
None — 0.67 59.0 3.38e-01 96.6% 86.7%
3712782 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 48.0 5.03e-01 74.7% 86.3%
None — 0.66 59.0 3.42e-01 100.0% 94.4%
3875218 4.1.1.128 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_4 0.65 43.0 4.89e-01 88.5% 90.8%
3943751 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 46.0 5.25e-01 94.3% 100.0%
3914746 4.1.1.128 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_4 0.61 41.0 4.53e-01 81.6% 87.1%
3482646 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 48.0 3.69e-01 88.5% 96.5%
3931905 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 48.0 4.36e-01 90.8% 80.0%
4121981 4.1.1.325 ↗ beta barrels › SH3 › SH3 › SH3 › KOW, KOW2_Spt5 0.55 45.0 3.94e-01 87.4% 72.8%