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KC465898.1__AGE60290.1__X__00020
Bact-VirKC465898.1__AGE60290.1__X__00020
Identity
- Accession:
- KC465898 ↗
- Kingdom:
- phage
Quality
79.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 103-238
Domain cluster:
rep: OM112209.1__UKL29972.1__X__00002__D938-1119
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2aplA01 | 1.10.8.330 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › PG0816-like | 0.75 | 38.0 | 5.39e-01 | 72.1% | 100.0% |
| 1qdmA03 | 1.10.225.10 | Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like | 0.69 | 28.0 | 3.64e-01 | 80.9% | 64.9% |
| 3vayA02 | 1.20.120.1600 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.53 | 33.0 | 4.00e-01 | 98.5% | 97.7% |
| 2ntxA01 | 1.20.58.2010 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › PRONE domain, subdomain 1 | 0.52 | 34.0 | 2.98e-01 | 86.8% | 42.9% |
| 6rqxA02 | 1.10.390.10 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 | 0.52 | 41.0 | 3.37e-01 | 100.0% | 46.3% |
| 1kf6D00 | 1.20.1300.10 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit | 0.52 | 32.0 | 3.38e-01 | 75.7% | 68.9% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3590527 | 4953.1.1.6 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › DUF2512 | 0.59 | 37.0 | 4.08e-01 | 75.0% | 76.4% |
| 3958634 | 5067.1.1.4 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › MMPL | 0.54 | 39.0 | 3.42e-01 | 83.1% | 49.5% |
| 5043560 | 7064.1.1.1 ↗ | alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 | 0.52 | 36.0 | 3.67e-01 | 100.0% | 71.9% |
| 3252661 | 1075.5.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › MatE | 0.51 | 33.0 | 2.73e-01 | 75.0% | 37.0% |
| 3613516 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.51 | 40.0 | 4.08e-01 | 97.1% | 85.2% |
| 4956867 | 7064.1.1.0 ↗ | alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 | 0.50 | 36.0 | 3.60e-01 | 100.0% | 72.1% |
| 3989507 | 7064.1.1.1 ↗ | alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 | 0.50 | 32.0 | 3.35e-01 | 75.0% | 68.8% |
D2
high
residues 272-366
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF18857.7 best | LPD38 | 67.2 | 2.80e-18 | 71.6% | 37.1% |
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2wpvE00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.61 | 52.0 | 3.73e-01 | 93.7% | 33.9% |
| 5t3dA01 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.61 | 41.0 | 3.37e-01 | 97.9% | 37.1% |
| 4q0jA03 | 3.30.450.270 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain | 0.58 | 41.0 | 3.62e-01 | 73.7% | 100.0% |
| 1u0mA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.58 | 37.0 | 3.24e-01 | 97.9% | 41.8% |
| 3v7iA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.58 | 39.0 | 3.43e-01 | 97.9% | 44.9% |
| 5ucoA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.56 | 36.0 | 3.15e-01 | 97.9% | 40.5% |
| 3m8eA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 35.0 | 3.47e-01 | 78.9% | 58.4% |
| 4hhvA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.56 | 39.0 | 3.86e-01 | 72.6% | 93.2% |
| 2gz4A00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.56 | 44.0 | 3.47e-01 | 85.3% | 47.5% |
| 1txdA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.56 | 39.0 | 3.62e-01 | 72.6% | 84.3% |
| 2dhkA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.54 | 38.0 | 3.76e-01 | 73.7% | 100.0% |
| 1ni7A00 | 3.90.1010.10 | Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › | 0.53 | 40.0 | 3.48e-01 | 81.1% | 87.9% |
| 4by6D02 | 1.25.40.800 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.53 | 46.0 | 3.52e-01 | 97.9% | 63.1% |
| 4gzuA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.52 | 39.0 | 3.47e-01 | 84.2% | 60.0% |
| 4a8eA02 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.51 | 37.0 | 3.11e-01 | 77.9% | 43.6% |
| 2v1nA01 | 1.10.10.2030 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DNA/RNA-binding protein Kin17, conserved domain | 0.51 | 38.0 | 3.82e-01 | 90.5% | 77.2% |
| 3u1nB01 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.51 | 40.0 | 2.88e-01 | 88.4% | 53.0% |
| 7qqfA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.50 | 44.0 | 3.09e-01 | 100.0% | 59.2% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4992470 | 896.1.1.0 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related | 0.68 | 43.0 | 5.10e-01 | 70.5% | 100.0% |
| 3717644 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.63 | 31.0 | 3.42e-01 | 72.6% | 57.3% |
| 3920054 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.62 | 31.0 | 3.53e-01 | 72.6% | 62.9% |
| 4001872 | 220.1.1.123 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SSH1-like_1st | 0.60 | 45.0 | 3.64e-01 | 80.0% | 84.9% |
| 4951675 | 101.1.2.530 ↗ | alpha arrays › HTH › HTH › winged helix domain › HVO_A0114 | 0.60 | 36.0 | 3.61e-01 | 83.2% | 57.0% |
| 3988224 | 102.1.1.170 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DNA_pol3_a_NII | 0.59 | 35.0 | 3.80e-01 | 83.2% | 72.0% |
| 4335937 | 327.10.1.11 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related › DNA_pol3_a_NII | 0.59 | 34.0 | 3.79e-01 | 83.2% | 72.0% |
| 3786023 | 101.1.2.154 ↗ | alpha arrays › HTH › HTH › winged helix domain › CDT1_C | 0.59 | 45.0 | 3.40e-01 | 96.8% | 32.5% |
| 4215095 | 604.39.1.0 ↗ | alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters | 0.59 | 51.0 | 3.52e-01 | 97.9% | 65.6% |
| 4095172 | 327.10.1.11 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related › DNA_pol3_a_NII | 0.58 | 35.0 | 3.35e-01 | 84.2% | 50.0% |
| 3581883 | 5048.1.1.0 ↗ | alpha complex topology › Aquaporin-like › Aquaporin-like › Aquaporin-like | 0.58 | 44.0 | 3.60e-01 | 82.1% | 65.6% |
| 4992529 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 34.0 | 3.50e-01 | 74.7% | 58.9% |
| 3292855 | 220.1.1.36 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_12 | 0.58 | 40.0 | 3.73e-01 | 73.7% | 86.4% |
| 5046131 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 37.0 | 3.71e-01 | 82.1% | 64.0% |
| 3270651 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.56 | 38.0 | 2.72e-01 | 70.5% | 53.0% |
| 3640935 | 3543.1.1.4 ↗ | alpha complex topology › Acid-activated urea channel › Acid-activated urea channel › Acid-activated urea channel › DUF716 | 0.56 | 42.0 | 3.13e-01 | 78.9% | 96.2% |
| 4990677 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.55 | 33.0 | 3.44e-01 | 78.9% | 63.5% |
| 5079818 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 37.0 | 3.83e-01 | 74.7% | 74.4% |
| 3958894 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 32.0 | 3.38e-01 | 75.8% | 63.5% |
| 5041715 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.54 | 35.0 | 3.34e-01 | 77.9% | 56.4% |
| 5031012 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 37.0 | 3.66e-01 | 75.8% | 66.7% |
| 3414597 | 101.1.2.137 ↗ | alpha arrays › HTH › HTH › winged helix domain › OST-HTH | 0.53 | 35.0 | 3.70e-01 | 86.3% | 76.5% |
| 3598612 | 220.1.1.230 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26289 | 0.53 | 39.0 | 4.01e-01 | 77.9% | 97.8% |
| 3919851 | 109.4.1.335 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SEN1_N | 0.52 | 43.0 | 2.78e-01 | 92.6% | 22.0% |
| 4939406 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 39.0 | 3.21e-01 | 80.0% | 45.7% |
| 5082317 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.51 | 36.0 | 3.67e-01 | 74.7% | 76.7% |
| 4624584 | 601.23.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III | 0.51 | 38.0 | 2.72e-01 | 80.0% | 99.4% |
| 3762392 | 101.1.2.309 ↗ | alpha arrays › HTH › HTH › winged helix domain › GPAT_C | 0.51 | 38.0 | 3.03e-01 | 83.2% | 88.6% |
| 4993121 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.50 | 35.0 | 3.61e-01 | 74.7% | 76.7% |
| 3760685 | 109.4.1.335 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SEN1_N | 0.50 | 41.0 | 2.59e-01 | 89.5% | 30.5% |
| 5022894 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.50 | 33.0 | 3.35e-01 | 73.7% | 67.4% |
D3
high
residues 374-472
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF18857.7 best | LPD38 | 82.7 | 5.00e-23 | 99.0% | 45.5% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3bg3A04 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.61 | 30.0 | 4.01e-01 | 88.9% | 95.7% |
| 1yfmA02 | 1.20.200.10 | Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) | 0.54 | 38.0 | 2.91e-01 | 75.8% | 86.2% |
| 1w8iA00 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.50 | 35.0 | 3.07e-01 | 72.7% | 74.0% |