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KC465899.1__AGE60380.1__X__00046
Bact-VirKC465899.1__AGE60380.1__X__00046
Identity
- Accession:
- KC465899 ↗
- Kingdom:
- phage
Quality
87.2
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Kyanoviridae›
Pelagibacter_phage_HTVC008M
TaxID: 1283076
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-77
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6my0A02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.86 | 54.0 | 5.84e-01 | 97.4% | 75.4% |
| 2efiA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.82 | 57.0 | 5.13e-01 | 100.0% | 54.0% |
| 6bhdA03 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.79 | 51.0 | 5.51e-01 | 100.0% | 79.4% |
| 2hcjB02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.72 | 53.0 | 4.93e-01 | 100.0% | 62.8% |
| 3wndA03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.71 | 54.0 | 4.99e-01 | 100.0% | 64.9% |
| 4zciA02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.70 | 52.0 | 4.72e-01 | 100.0% | 59.4% |
| 3nrlA00 | 2.40.10.390 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.67 | 38.0 | 4.01e-01 | 100.0% | 61.8% |
| 3p26A03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.65 | 59.0 | 5.21e-01 | 100.0% | 70.9% |
| 2k3yA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 60.0 | 5.15e-01 | 100.0% | 80.0% |
| 6gbuD00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.65 | 48.0 | 5.24e-01 | 96.1% | 93.8% |
| 1g7sA02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.63 | 50.0 | 4.46e-01 | 100.0% | 60.2% |
| 1r5bA03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.60 | 53.0 | 4.76e-01 | 100.0% | 69.1% |
| 3wuzA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 45.0 | 3.87e-01 | 84.2% | 73.3% |
| 3uc2A00 | 2.60.40.3340 | Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4426 | 0.55 | 43.0 | 3.69e-01 | 85.5% | 93.5% |
| 4y4qA00 | 2.40.260.10 | Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase | 0.54 | 39.0 | 3.13e-01 | 78.9% | 59.2% |
| 3t0pA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.54 | 42.0 | 3.15e-01 | 85.5% | 76.7% |
| 4exrA02 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 36.0 | 3.73e-01 | 98.7% | 76.1% |
| 2pndA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 40.0 | 3.52e-01 | 85.5% | 94.1% |
ECOD (54)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3315471 | 4.8.1.10 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like | 0.85 | 60.0 | 5.73e-01 | 100.0% | 64.7% |
| 3302166 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.85 | 61.0 | 6.62e-01 | 100.0% | 87.7% |
| 3570369 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.85 | 59.0 | 5.56e-01 | 100.0% | 61.1% |
| 3913782 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.84 | 62.0 | 6.69e-01 | 98.7% | 90.6% |
| 1567496 | 4.8.1.6 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot | 0.84 | 57.0 | 6.55e-01 | 100.0% | 94.7% |
| 3399965 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.79 | 59.0 | 5.55e-01 | 100.0% | 65.6% |
| 4967823 | 239.1.1.15 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › CPxCG_zf | 0.79 | 48.0 | 4.92e-01 | 76.3% | 62.7% |
| 3791752 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.78 | 57.0 | 6.18e-01 | 100.0% | 89.2% |
| 3256053 | 4.8.1.10 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like | 0.78 | 58.0 | 5.46e-01 | 100.0% | 65.6% |
| 3730835 | 4.8.1.10 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like | 0.78 | 58.0 | 5.33e-01 | 100.0% | 62.1% |
| 1826911 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.77 | 60.0 | 5.77e-01 | 100.0% | 72.4% |
| 3627576 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.77 | 61.0 | 6.55e-01 | 100.0% | 98.5% |
| 3584555 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.76 | 60.0 | 6.26e-01 | 100.0% | 91.4% |
| 4028731 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.74 | 56.0 | 6.03e-01 | 100.0% | 92.3% |
| 4108526 | 1.1.7.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 | 0.73 | 55.0 | 5.07e-01 | 100.0% | 63.2% |
| 3615013 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.73 | 58.0 | 5.05e-01 | 100.0% | 56.5% |
| 4890601 | 1.1.7.93 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D3, GTP_EFTU_D2 | 0.73 | 53.0 | 4.88e-01 | 100.0% | 59.6% |
| 3719743 | 1.1.7.50 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 | 0.72 | 58.0 | 5.08e-01 | 100.0% | 59.1% |
| 3978784 | 1.1.7.36 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Peptidase_U32_C | 0.71 | 52.0 | 4.58e-01 | 100.0% | 53.7% |
| 4997059 | 4.1.1.139 ↗ | beta barrels › SH3 › SH3 › SH3 › IF5A-like_N | 0.71 | 54.0 | 5.46e-01 | 100.0% | 81.3% |
| 5004300 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.71 | 53.0 | 4.73e-01 | 100.0% | 57.1% |
| 4230323 | 1.1.8.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP_EFTU_D3 | 0.70 | 54.0 | 4.97e-01 | 100.0% | 64.0% |
| 4315769 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.69 | 54.0 | 4.78e-01 | 100.0% | 58.2% |
| 4944212 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.68 | 49.0 | 4.64e-01 | 100.0% | 64.8% |
| 4947034 | 1.1.7.143 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › IF-2 | 0.67 | 56.0 | 4.81e-01 | 100.0% | 57.5% |
| 5032255 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 50.0 | 5.22e-01 | 100.0% | 85.7% |
| 4003477 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.67 | 61.0 | 5.56e-01 | 100.0% | 90.0% |
| 3933135 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.67 | 60.0 | 4.45e-01 | 100.0% | 41.7% |
| 4929065 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.67 | 55.0 | 4.69e-01 | 100.0% | 55.2% |
| 4934409 | 1.1.7.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 | 0.66 | 55.0 | 4.74e-01 | 100.0% | 57.5% |
| 3391463 | 4.18.1.1 ↗ | beta barrels › SH3 › Plus3 › Plus3 › Plus-3 | 0.66 | 56.0 | 4.71e-01 | 100.0% | 56.0% |
| 3090683 | 4.8.1.10 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like | 0.66 | 61.0 | 5.30e-01 | 100.0% | 70.3% |
| 4932728 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.65 | 54.0 | 4.69e-01 | 100.0% | 59.1% |
| 3881192 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 55.0 | 4.19e-01 | 100.0% | 40.6% |
| 5026641 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.65 | 54.0 | 4.61e-01 | 100.0% | 57.5% |
| 3703449 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.65 | 55.0 | 5.57e-01 | 98.7% | 92.0% |
| 3784405 | 4.8.1.10 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like | 0.64 | 59.0 | 4.95e-01 | 100.0% | 76.8% |
| 2756432 | 1.1.8.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C | 0.63 | 57.0 | 4.63e-01 | 100.0% | 54.3% |
| 3475837 | 4.8.1.6 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot | 0.63 | 59.0 | 4.84e-01 | 100.0% | 60.8% |
| 1851169 | 1.1.8.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › aSelB_III | 0.63 | 52.0 | 4.50e-01 | 100.0% | 58.6% |
| 3489170 | 4.8.1.6 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot | 0.63 | 58.0 | 5.46e-01 | 98.7% | 85.6% |
| 3270538 | 1.1.8.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C | 0.63 | 55.0 | 4.72e-01 | 100.0% | 60.8% |
| 3608683 | 1.1.8.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C | 0.63 | 56.0 | 4.67e-01 | 100.0% | 58.5% |
| 4932663 | 1.1.8.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C | 0.62 | 55.0 | 4.91e-01 | 100.0% | 69.1% |
| 4097843 | 4.11.1.6 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › PF31032 | 0.62 | 57.0 | 4.39e-01 | 100.0% | 54.4% |
| 4043818 | 1.1.8.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C | 0.61 | 54.0 | 4.63e-01 | 100.0% | 61.7% |
| 3929839 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 56.0 | 4.60e-01 | 100.0% | 62.2% |
| 3219409 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 56.0 | 5.31e-01 | 100.0% | 85.6% |
| 3497678 | 1.1.8.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › euk_SelB_III | 0.60 | 53.0 | 4.48e-01 | 100.0% | 61.5% |
| 3795417 | 1.1.8.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › euk_SelB_III | 0.59 | 47.0 | 4.18e-01 | 100.0% | 58.3% |
| 3665168 | 1.1.8.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C | 0.58 | 51.0 | 4.42e-01 | 100.0% | 69.2% |
| 3597932 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.57 | 47.0 | 4.36e-01 | 100.0% | 70.5% |
| 5040464 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.51 | 41.0 | 3.91e-01 | 100.0% | 72.6% |
| 2117377 | 11.1.1.14 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glyco_hydro_2 | 0.50 | 39.0 | 3.45e-01 | 84.2% | 92.0% |