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KC465899.1__AGE60400.1__X__00066
Bact-VirKC465899.1__AGE60400.1__X__00066
Identity
- Accession:
- KC465899 ↗
- Kingdom:
- phage
Quality
92.3
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Kyanoviridae›
Pelagibacter_phage_HTVC008M
TaxID: 1283076
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-106
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4jrfA01 | 2.60.40.2580 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.62 | 44.0 | 3.68e-01 | 97.1% | 44.0% |
| 2kq8A01 | 4.10.80.110 | Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › | 0.59 | 18.0 | 2.66e-01 | 78.1% | 95.7% |
| 4gu4A01 | 2.10.25.20 | Mainly Beta › Ribbon › Laminin › reovirus attachment protein sigma1; domain 1 | 0.52 | 21.0 | 3.00e-01 | 100.0% | 86.0% |
| 1dmuA00 | 3.40.600.20 | Alpha Beta › 3-Layer(aba) Sandwich › ECO RV Endonuclease; Chain A › Restriction endonuclease BglI | 0.50 | 42.0 | 3.11e-01 | 94.3% | 87.3% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5028091 | 3127.1.1.1 ↗ | beta sandwiches › Putative transcription regulator R01717-related › Putative transcription regulator R01717-related › Putative transcription regulator R01717-related › DUF192 | 0.73 | 39.0 | 4.10e-01 | 76.2% | 57.9% |
| 4941419 | 3127.1.1.1 ↗ | beta sandwiches › Putative transcription regulator R01717-related › Putative transcription regulator R01717-related › Putative transcription regulator R01717-related › DUF192 | 0.69 | 38.0 | 3.77e-01 | 76.2% | 51.8% |
| 4647731 | 223.1.1.24 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_8 | 0.67 | 27.0 | 3.22e-01 | 81.0% | 52.0% |
| 224089 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.62 | 44.0 | 3.70e-01 | 97.1% | 44.8% |
| 4958534 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.52 | 27.0 | 2.97e-01 | 81.0% | 60.0% |
D2
high
residues 116-192
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4exrA02 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.64 | 34.0 | 3.53e-01 | 90.9% | 54.9% |
| 1oxxK02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.57 | 30.0 | 3.63e-01 | 80.5% | 82.2% |
| 2k75A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.55 | 32.0 | 2.97e-01 | 80.5% | 43.7% |
| 3vsfC01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.53 | 36.0 | 2.46e-01 | 72.7% | 81.6% |
| 6cz7A01 | 2.20.25.90 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ADC-like domains | 0.53 | 33.0 | 3.51e-01 | 100.0% | 75.8% |
| 2retA00 | 3.30.1300.30 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like | 0.50 | 34.0 | 3.31e-01 | 77.9% | 63.1% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3970479 | 809.1.1.0 ↗ | a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP | 0.61 | 34.0 | 3.47e-01 | 90.9% | 56.0% |
| 3295296 | 4.8.1.7 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › SAWADEE | 0.58 | 28.0 | 3.38e-01 | 79.2% | 71.1% |
| 4085451 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.55 | 36.0 | 3.25e-01 | 87.0% | 46.4% |
| 3660454 | 5.1.5.96 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › FBA_3 | 0.55 | 38.0 | 2.55e-01 | 71.4% | 21.7% |
| 3933782 | 4184.1.1.0 ↗ | beta barrels › MFPT repeat › MFPT repeat › MFPT repeat | 0.54 | 31.0 | 3.01e-01 | 100.0% | 47.1% |
| 3491951 | 5.1.4.220 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR35_2nd | 0.53 | 38.0 | 2.52e-01 | 76.6% | 99.4% |
| 1170462 | 243.3.1.3 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY | 0.53 | 29.0 | 3.15e-01 | 92.2% | 60.7% |
| 5079197 | 375.1.1.298 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_HMPTM | 0.51 | 30.0 | 3.45e-01 | 77.9% | 86.0% |
| 4447175 | 375.13.1.1 ↗ | few secondary structure elements › Rubredoxin-like › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Toprim_C_rpt | 0.51 | 35.0 | 3.69e-01 | 81.8% | 84.6% |
| 3393661 | 243.19.1.2 ↗ | a+b two layers › Cystatin-like › Phi ETA orf 56-like protein C-terminal domains › Phi ETA orf 56-like protein C-terminal domains › Chitin_bind_4 | 0.51 | 28.0 | 3.12e-01 | 89.6% | 68.3% |
| 5054123 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.51 | 33.0 | 3.48e-01 | 100.0% | 74.3% |
| 3278081 | 2.4.1.15 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2, CysA_C_terminal | 0.51 | 33.0 | 2.95e-01 | 84.4% | 43.3% |
| 3602976 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.50 | 32.0 | 3.65e-01 | 100.0% | 90.9% |