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KC465899.1__AGE60450.1__X__00116
Bact-VirKC465899.1__AGE60450.1__X__00116
Identity
- Accession:
- KC465899 ↗
- Kingdom:
- phage
Quality
91.7
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Kyanoviridae›
Pelagibacter_phage_HTVC008M
TaxID: 1283076
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 36-149
Domain cluster:
rep: NC_027299.1__YP_009146220.1__SUFP_046__00046__D4-101
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF10544.16 best | T5orf172 | 21.3 | 4.30e-04 | 86.8% | 89.8% |
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3egrA00 | 3.10.20.520 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phenylacetic acid degradation B | 0.61 | 33.0 | 4.21e-01 | 86.8% | 95.2% |
| 1m0wA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.57 | 31.0 | 3.24e-01 | 98.2% | 54.6% |
| 6rptC00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 33.0 | 3.34e-01 | 100.0% | 59.8% |
| 4d7pA00 | 2.60.40.730 | Mainly Beta › Sandwich › Immunoglobulin-like › SOR catalytic domain | 0.51 | 29.0 | 3.20e-01 | 100.0% | 66.7% |
| 6tr4A02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.51 | 28.0 | 2.75e-01 | 100.0% | 45.0% |
| 2h6uA00 | 2.60.40.180 | Mainly Beta › Sandwich › Immunoglobulin-like › Transthyretin/hydroxyisourate hydrolase domain | 0.51 | 32.0 | 3.28e-01 | 100.0% | 64.0% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3597677 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.81 | 71.0 | 7.40e-01 | 100.0% | 100.0% |
| 3897051 | 821.1.1.8 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › ANKLE2_3rd | 0.64 | 54.0 | 5.62e-01 | 100.0% | 99.0% |
| 3606274 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.62 | 42.0 | 4.32e-01 | 100.0% | 72.7% |
| 3669721 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.60 | 44.0 | 3.30e-01 | 77.2% | 78.7% |
| 4978219 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.57 | 34.0 | 3.85e-01 | 81.6% | 77.6% |
| 3411669 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 35.0 | 3.55e-01 | 100.0% | 63.6% |
| 3230558 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.55 | 33.0 | 3.55e-01 | 85.1% | 68.0% |
| 3484264 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.52 | 32.0 | 3.73e-01 | 99.1% | 87.5% |
| 3423860 | 148.1.3.207 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DUF7751 | 0.51 | 35.0 | 3.91e-01 | 94.7% | 94.1% |