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KC465899.1__AGE60466.1__X__00132
Bact-VirKC465899.1__AGE60466.1__X__00132
Identity
- Accession:
- KC465899 ↗
- Kingdom:
- phage
Quality
66.6
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Kyanoviridae›
Pelagibacter_phage_HTVC008M
TaxID: 1283076
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 172-217
Domain cluster:
representative
CATH (39)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1z1bA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.70 | 58.0 | 5.46e-01 | 95.7% | 77.2% |
| 1icfI00 | 4.10.800.10 | Few Secondary Structures › Irregular › Invariant Chain; Chain I › Thyroglobulin type-1 | 0.69 | 50.0 | 4.48e-01 | 95.7% | 55.4% |
| 2k49A00 | 2.30.29.80 | Mainly Beta › Roll › PH-domain like › | 0.69 | 57.0 | 4.28e-01 | 95.7% | 82.2% |
| 2bn8A00 | 3.30.730.20 | Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › Cell division activator CedA | 0.66 | 58.0 | 5.15e-01 | 95.7% | 67.2% |
| 2k7iA01 | 3.30.160.160 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › YegP-like | 0.66 | 52.0 | 5.21e-01 | 91.3% | 95.8% |
| 2b7jB01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.63 | 50.0 | 3.53e-01 | 95.7% | 84.4% |
| 1upqA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.62 | 50.0 | 3.93e-01 | 93.5% | 43.9% |
| 1gp1A00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.62 | 49.0 | 3.41e-01 | 95.7% | 85.9% |
| 3eytB00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.62 | 49.0 | 3.56e-01 | 95.7% | 81.8% |
| 5bpxA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.61 | 42.0 | 2.88e-01 | 71.7% | 53.6% |
| 3kbqB00 | 3.40.980.10 | Alpha Beta › 3-Layer(aba) Sandwich › Molybdenum Cofactor Biosythetic Enzyme; Chain A › MoaB/Mog-like domain | 0.61 | 48.0 | 3.32e-01 | 89.1% | 95.9% |
| 3me8B00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.61 | 48.0 | 3.44e-01 | 93.5% | 82.1% |
| 3ebrA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.61 | 41.0 | 2.84e-01 | 71.7% | 53.2% |
| 2hjjA00 | 3.30.160.130 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › ykff protein like domains | 0.60 | 51.0 | 4.65e-01 | 100.0% | 84.8% |
| 4wfsA01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.60 | 45.0 | 2.87e-01 | 80.4% | 27.5% |
| 3id6A01 | 3.30.420.220 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.60 | 48.0 | 3.77e-01 | 93.5% | 56.6% |
| 2o1qA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.60 | 42.0 | 3.04e-01 | 71.7% | 89.0% |
| 3tiiA03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.60 | 50.0 | 4.53e-01 | 95.7% | 84.6% |
| 3fk8A00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.60 | 45.0 | 3.38e-01 | 87.0% | 79.4% |
| 3hr8A02 | 3.30.250.10 | Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › RecA protein, C-terminal domain | 0.59 | 48.0 | 4.25e-01 | 100.0% | 70.7% |
| 2kgtA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.59 | 42.0 | 3.65e-01 | 76.1% | 51.4% |
| 3fmwC03 | 3.40.30.120 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › | 0.59 | 44.0 | 3.49e-01 | 89.1% | 60.5% |
| 1d4tA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.58 | 49.0 | 3.88e-01 | 100.0% | 64.4% |
| 1fc6A02 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.58 | 44.0 | 3.79e-01 | 95.7% | 92.4% |
| 4ecnA01 | 2.60.40.3540 | Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4458 | 0.58 | 40.0 | 3.12e-01 | 71.7% | 91.3% |
| 2r0cA03 | 3.40.30.120 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › | 0.58 | 43.0 | 3.42e-01 | 91.3% | 62.9% |
| 6d6zA02 | 3.40.50.11440 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › LarA, N-terminal domain | 0.57 | 41.0 | 2.77e-01 | 84.8% | 81.4% |
| 4aq1A05 | 2.60.40.3460 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.57 | 43.0 | 3.28e-01 | 82.6% | 87.3% |
| 2lrtA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.57 | 43.0 | 3.21e-01 | 93.5% | 75.7% |
| 2lg1A02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.56 | 45.0 | 3.47e-01 | 95.7% | 47.8% |
| 4cy8A03 | 3.40.30.120 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › | 0.56 | 42.0 | 3.13e-01 | 95.7% | 55.7% |
| 5xpyA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.55 | 41.0 | 3.27e-01 | 89.1% | 37.0% |
| 2a2pA01 | 3.40.30.50 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Sep15/SelM thioredoxin-like domain, active-site redox motif | 0.54 | 44.0 | 3.55e-01 | 95.7% | 92.1% |
| 4hwtA02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.54 | 40.0 | 3.35e-01 | 97.8% | 96.4% |
| 6julA02 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.53 | 41.0 | 3.49e-01 | 100.0% | 65.6% |
| 2x5cA01 | 3.30.70.3590 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 39.0 | 3.27e-01 | 84.8% | 51.6% |
| 1vr9A01 | 3.90.1280.20 | Alpha Beta › Alpha-Beta Complex › CBS domain Like › | 0.53 | 35.0 | 3.20e-01 | 89.1% | 50.0% |
| 3k2yA00 | 3.30.70.2330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 40.0 | 3.27e-01 | 97.8% | 48.5% |
| 2jh1A01 | 3.90.640.70 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › | 0.51 | 39.0 | 3.10e-01 | 89.1% | 68.5% |
ECOD (44)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4188237 | 4325.1.1.1 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 | 0.73 | 59.0 | 5.60e-01 | 91.3% | 85.5% |
| 4953660 | 3407.1.1.2 ↗ | mixed a+b and a/b › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain › Nop5_56-rel_N_Arc | 0.72 | 59.0 | 4.36e-01 | 93.5% | 50.0% |
| 3675412 | 386.1.1.6 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › ARS2 | 0.71 | 59.0 | 4.94e-01 | 95.7% | 56.2% |
| 3941091 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.69 | 57.0 | 4.11e-01 | 95.7% | 83.6% |
| 4297945 | 4325.1.1.1 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 | 0.69 | 57.0 | 5.45e-01 | 95.7% | 85.5% |
| 3698917 | 220.1.1.30 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_BEACH | 0.68 | 54.0 | 4.02e-01 | 89.1% | 37.5% |
| 4484607 | 2003.1.3.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO | 0.68 | 49.0 | 2.83e-01 | 91.3% | 8.7% |
| 3959637 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.66 | 52.0 | 4.00e-01 | 93.5% | 98.3% |
| None | — | 0.66 | 47.0 | 2.89e-01 | 91.3% | 12.7% | |
| 3266831 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.64 | 49.0 | 3.91e-01 | 84.8% | 67.4% |
| 4081720 | 2003.1.3.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO | 0.63 | 45.0 | 2.66e-01 | 91.3% | 9.9% |
| 3576679 | 2485.1.1.32 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Sep15_SelM | 0.63 | 46.0 | 3.48e-01 | 82.6% | 63.2% |
| 3901590 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.63 | 53.0 | 4.24e-01 | 100.0% | 65.0% |
| 3717655 | 220.1.1.30 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_BEACH | 0.62 | 51.0 | 4.07e-01 | 95.7% | 47.0% |
| 3486486 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.62 | 51.0 | 4.06e-01 | 93.5% | 44.3% |
| 3742004 | 220.1.1.30 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_BEACH | 0.62 | 51.0 | 3.83e-01 | 95.7% | 36.8% |
| 3233247 | 2485.1.1.32 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Sep15_SelM | 0.62 | 43.0 | 3.76e-01 | 73.9% | 100.0% |
| 3693539 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.62 | 47.0 | 3.28e-01 | 91.3% | 73.9% |
| 3222762 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.61 | 49.0 | 4.19e-01 | 93.5% | 66.3% |
| 3503277 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.61 | 50.0 | 4.52e-01 | 93.5% | 80.0% |
| 4975115 | 7541.1.1.0 ↗ | a/b three-layered sandwiches › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins | 0.61 | 45.0 | 3.27e-01 | 84.8% | 87.7% |
| 5047735 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.61 | 47.0 | 3.32e-01 | 91.3% | 26.8% |
| 4023242 | 220.1.1.187 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › VPS13_C | 0.61 | 47.0 | 3.46e-01 | 89.1% | 32.0% |
| 3284596 | 2485.1.1.56 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Rng_hyd_C | 0.60 | 44.0 | 3.50e-01 | 89.1% | 60.8% |
| 3939128 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.59 | 47.0 | 3.61e-01 | 95.7% | 37.3% |
| 3685086 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.59 | 45.0 | 3.32e-01 | 93.5% | 81.9% |
| 4169299 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.59 | 46.0 | 3.55e-01 | 87.0% | 94.5% |
| 4650117 | 502.1.1.1 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C | 0.59 | 48.0 | 4.19e-01 | 100.0% | 66.3% |
| 11363 | 2485.1.1.32 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Sep15_SelM | 0.58 | 45.0 | 3.46e-01 | 89.1% | 80.8% |
| 3958672 | 2485.1.1.56 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Rng_hyd_C | 0.58 | 44.0 | 3.97e-01 | 89.1% | 98.6% |
| 4566136 | 2003.1.3.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO | 0.58 | 48.0 | 2.90e-01 | 91.3% | 61.7% |
| 3387936 | 7541.1.1.1 ↗ | a/b three-layered sandwiches › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › MoCF_biosynth | 0.57 | 46.0 | 3.20e-01 | 93.5% | 83.0% |
| 3401155 | 206.1.1.55 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › EcKL | 0.57 | 45.0 | 2.68e-01 | 95.7% | 49.8% |
| 3396736 | 65.1.1.0 ↗ | beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases | 0.55 | 40.0 | 3.78e-01 | 89.1% | 80.0% |
| 3229685 | 5.1.4.19 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Coatomer_WDAD | 0.55 | 42.0 | 2.70e-01 | 100.0% | 22.6% |
| 3401112 | 65.1.1.0 ↗ | beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases | 0.54 | 43.0 | 4.04e-01 | 91.3% | 88.3% |
| 4179161 | 7502.1.1.0 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS | 0.54 | 40.0 | 3.60e-01 | 89.1% | 100.0% |
| 4518300 | 2003.1.3.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO | 0.54 | 42.0 | 2.65e-01 | 100.0% | 86.9% |
| 3185897 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.54 | 40.0 | 3.10e-01 | 95.7% | 77.1% |
| 5012504 | 101.1.8.8 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integr_3 | 0.53 | 39.0 | 2.79e-01 | 89.1% | 25.6% |
| 3462961 | 5.1.4.122 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF295 | 0.53 | 41.0 | 2.71e-01 | 95.7% | 32.2% |
| 3379174 | 109.4.1.1845 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SWIM | 0.52 | 43.0 | 3.08e-01 | 95.7% | 98.7% |
| 3624498 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.51 | 39.0 | 3.05e-01 | 93.5% | 44.0% |
| 4545531 | 220.1.1.255 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_10 | 0.50 | 38.0 | 3.27e-01 | 84.8% | 55.0% |
D2
high
residues 226-361
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1aa7A02 | 1.10.10.180 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Influenza matrix protein M1, N-terminal subdomain 2 | 0.55 | 27.0 | 3.49e-01 | 74.3% | 82.1% |
| 2w3cA01 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.53 | 46.0 | 3.78e-01 | 98.5% | 59.2% |
| 4abnA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.50 | 43.0 | 3.43e-01 | 93.4% | 88.5% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3911465 | 109.3.1.254 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › TMEM232 | 0.57 | 51.0 | 4.44e-01 | 100.0% | 79.5% |
| 3925443 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 48.0 | 4.76e-01 | 97.8% | 91.4% |
| 2581370 | 109.4.1.19 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Vitellogenin_N | 0.52 | 46.0 | 3.56e-01 | 98.5% | 57.6% |
| 3183176 | 601.1.1.79 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › TFB6 | 0.51 | 42.0 | 3.81e-01 | 89.7% | 100.0% |