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KC465899.1__AGE60517.1__X__00183
Bact-VirKC465899.1__AGE60517.1__X__00183
Identity
- Accession:
- KC465899 ↗
- Kingdom:
- phage
Quality
89.7
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Kyanoviridae›
Pelagibacter_phage_HTVC008M
TaxID: 1283076
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 11-138
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5by5A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.60 | 40.0 | 4.21e-01 | 93.8% | 74.8% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2832043 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.72 | 27.0 | 2.89e-01 | 100.0% | 38.4% |
| 4887075 | 10.12.1.53 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_3 | 0.71 | 64.0 | 5.88e-01 | 99.2% | 89.7% |
| 3665817 | 10.12.1.7 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Auxin_BP | 0.69 | 48.0 | 5.28e-01 | 89.1% | 86.7% |
| 4011676 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.64 | 50.0 | 4.64e-01 | 81.2% | 86.2% |
| 3868570 | 3529.1.1.3 ↗ | beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault_3 | 0.56 | 28.0 | 3.16e-01 | 92.2% | 59.0% |
| 3615721 | 3529.1.1.3 ↗ | beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault_3 | 0.53 | 27.0 | 3.12e-01 | 85.2% | 65.3% |
| 3742945 | 12.1.1.14 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › A_amylase_dom_C | 0.51 | 28.0 | 3.39e-01 | 77.3% | 83.7% |
| 3739033 | 12.1.1.14 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › A_amylase_dom_C | 0.51 | 30.0 | 3.42e-01 | 80.5% | 83.5% |