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KC465899.1__AGE60522.1__X__00188
Bact-VirKC465899.1__AGE60522.1__X__00188
Identity
- Accession:
- KC465899 ↗
- Kingdom:
- phage
Quality
88.4
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Kyanoviridae›
Pelagibacter_phage_HTVC008M
TaxID: 1283076
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-46
Domain cluster:
representative
CATH (49)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4u1cA01 | 4.10.860.10 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain | 0.91 | 82.0 | 7.71e-01 | 97.7% | 84.6% |
| 1z0jB00 | 4.10.860.20 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain | 0.91 | 84.0 | 7.95e-01 | 100.0% | 90.2% |
| 3k6tB00 | 1.20.5.4010 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.91 | 77.0 | 7.42e-01 | 90.9% | 89.8% |
| 3tklB01 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.91 | 83.0 | 7.28e-01 | 100.0% | 71.0% |
| 3r84A00 | 1.10.287.3490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.90 | 81.0 | 6.51e-01 | 100.0% | 64.2% |
| 3layF00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.90 | 82.0 | 6.67e-01 | 100.0% | 61.5% |
| 4b6xA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.90 | 81.0 | 6.87e-01 | 100.0% | 66.7% |
| 3ilxA02 | 1.10.287.2170 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.89 | 75.0 | 7.55e-01 | 90.9% | 90.9% |
| 7ymiZ01 | 1.10.287.740 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre | 0.89 | 79.0 | 7.22e-01 | 100.0% | 94.8% |
| 3lssA01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.89 | 79.0 | 5.79e-01 | 100.0% | 65.2% |
| 1kfdA02 | 1.20.1060.10 | Mainly Alpha › Up-down Bundle › Taq DNA Polymerase; Chain T, domain 4 › Taq DNA Polymerase; Chain T, domain 4 | 0.87 | 76.0 | 6.40e-01 | 100.0% | 59.2% |
| 3ehfB01 | 6.10.250.2870 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.87 | 77.0 | 5.79e-01 | 100.0% | 43.3% |
| 3kr9A02 | 1.10.287.1890 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.87 | 76.0 | 6.83e-01 | 97.7% | 70.5% |
| 3ehfD01 | 1.20.5.1930 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.87 | 76.0 | 6.78e-01 | 100.0% | 71.4% |
| 2kw6A00 | 6.10.140.1300 | Special › Helix non-globular › Helix Hairpins › | 0.87 | 73.0 | 6.38e-01 | 93.2% | 76.9% |
| 4a25B01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.86 | 76.0 | 5.09e-01 | 100.0% | 28.0% |
| 2y39A00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.86 | 75.0 | 5.58e-01 | 100.0% | 43.6% |
| 4hz4A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.86 | 75.0 | 5.54e-01 | 100.0% | 42.0% |
| 2qkdA02 | 2.60.120.1040 | Mainly Beta › Sandwich › Jelly Rolls › ZPR1, A/B domain | 0.85 | 75.0 | 5.21e-01 | 100.0% | 31.4% |
| 4abmD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.85 | 74.0 | 6.16e-01 | 100.0% | 58.4% |
| 1wpbG01 | 1.10.287.680 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.84 | 65.0 | 6.06e-01 | 93.2% | 68.5% |
| 1vx7301 | 1.10.287.310 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.84 | 67.0 | 5.54e-01 | 100.0% | 51.4% |
| 2a2cA03 | 1.20.1440.340 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.84 | 72.0 | 5.03e-01 | 97.7% | 63.0% |
| 6n7pX01 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.83 | 72.0 | 4.30e-01 | 100.0% | 16.1% |
| 2p4vA01 | 1.10.287.180 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain | 0.83 | 74.0 | 6.13e-01 | 100.0% | 65.8% |
| 6t0bc01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.83 | 74.0 | 6.05e-01 | 100.0% | 64.1% |
| 2gv9A05 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.83 | 72.0 | 6.46e-01 | 95.5% | 89.8% |
| 2y4tA02 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.82 | 67.0 | 6.44e-01 | 100.0% | 78.8% |
| 3h3mA00 | 1.20.58.380 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Flagellar protein flit. | 0.82 | 72.0 | 5.70e-01 | 100.0% | 50.6% |
| 2pusA04 | 6.10.140.300 | Special › Helix non-globular › Helix Hairpins › | 0.81 | 69.0 | 5.23e-01 | 100.0% | 41.7% |
| 1x0tA01 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.81 | 68.0 | 6.24e-01 | 100.0% | 72.1% |
| 2yevA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.81 | 70.0 | 5.95e-01 | 100.0% | 63.5% |
| 1b04A03 | 1.10.287.610 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.78 | 66.0 | 5.94e-01 | 95.5% | 82.3% |
| 1jalA03 | 1.10.150.300 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Obg-related GTPase Ych/YyaF, coiled-coil domain | 0.77 | 60.0 | 4.93e-01 | 100.0% | 46.9% |
| 4asvA00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.77 | 63.0 | 5.36e-01 | 100.0% | 54.4% |
| 2nr4A02 | 1.20.58.290 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. | 0.77 | 62.0 | 5.72e-01 | 100.0% | 69.0% |
| 1sumB02 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.77 | 64.0 | 4.77e-01 | 100.0% | 38.1% |
| 2zt5A02 | 3.30.40.230 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › | 0.76 | 66.0 | 5.25e-01 | 95.5% | 58.3% |
| 3qo8A01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.73 | 59.0 | 4.68e-01 | 100.0% | 45.3% |
| 1ku9A02 | 1.10.287.450 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.73 | 59.0 | 5.40e-01 | 100.0% | 96.9% |
| 1p49A02 | 1.10.287.550 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.70 | 57.0 | 5.32e-01 | 100.0% | 78.0% |
| 2ptfB02 | 1.20.58.290 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. | 0.70 | 56.0 | 5.21e-01 | 95.5% | 71.9% |
| 4l8jA04 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.69 | 56.0 | 5.28e-01 | 100.0% | 93.2% |
| 5dn6J00 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.68 | 58.0 | 4.97e-01 | 100.0% | 64.9% |
| 3l1nA01 | 6.10.140.790 | Special › Helix non-globular › Helix Hairpins › | 0.67 | 56.0 | 5.39e-01 | 100.0% | 90.2% |
| 3nrxA00 | 1.20.58.1520 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.66 | 52.0 | 3.99e-01 | 100.0% | 37.4% |
| 2js5A00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.66 | 53.0 | 4.74e-01 | 100.0% | 67.6% |
| 2b3tB01 | 6.10.140.1980 | Special › Helix non-globular › Helix Hairpins › | 0.60 | 52.0 | 4.60e-01 | 100.0% | 84.6% |
| 4fjvA02 | 1.20.1300.20 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Peptidase C65 Otubain, subdomain 2 | 0.60 | 51.0 | 3.61e-01 | 100.0% | 31.2% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3372432 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.92 | 84.0 | 6.75e-01 | 100.0% | 56.2% |
| 5011468 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.92 | 85.0 | 5.91e-01 | 100.0% | 36.0% |
| 149872 | 3291.1.1.1 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Snf7 | 0.92 | 82.0 | 6.69e-01 | 100.0% | 57.0% |
| 3922393 | 601.39.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Enhancer of filamentation 1 › Enhancer of filamentation 1 | 0.91 | 84.0 | 5.75e-01 | 100.0% | 33.3% |
| 3595968 | 605.2.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Hypothetical protein D-63 › Hypothetical protein D-63 | 0.90 | 81.0 | 6.57e-01 | 100.0% | 73.8% |
| 3945531 | 605.1.1.4 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA_3 | 0.90 | 82.0 | 6.90e-01 | 100.0% | 64.3% |
| 4932313 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.89 | 78.0 | 6.88e-01 | 100.0% | 69.2% |
| 1069451 | 3652.1.1.1 ↗ | alpha duplicates or obligate multimers › Qua1 › Qua1 › Qua1 › Qua1 | 0.88 | 69.0 | 7.37e-01 | 84.1% | 100.0% |
| 3481090 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.88 | 78.0 | 4.27e-01 | 100.0% | 6.6% |
| 5039854 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.87 | 77.0 | 6.44e-01 | 100.0% | 60.0% |
| 4680241 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.87 | 78.0 | 6.81e-01 | 100.0% | 90.8% |
| 4657744 | 109.4.1.182 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sec7-like_HUS,DCB | 0.87 | 77.0 | 4.62e-01 | 100.0% | 15.5% |
| 3237264 | 3755.4.1.82 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Snf7 | 0.87 | 75.0 | 5.36e-01 | 100.0% | 34.6% |
| 4305528 | 109.4.1.222 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DCB | 0.86 | 76.0 | 4.77e-01 | 100.0% | 20.0% |
| 3597917 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.86 | 73.0 | 5.26e-01 | 93.2% | 36.5% |
| 3704098 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.86 | 76.0 | 5.03e-01 | 100.0% | 26.5% |
| 4198998 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.86 | 74.0 | 7.14e-01 | 97.7% | 88.0% |
| 5067349 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.84 | 72.0 | 6.13e-01 | 100.0% | 60.0% |
| 3961630 | 101.1.2.456 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_MmpR5 | 0.84 | 73.0 | 4.93e-01 | 100.0% | 28.1% |
| 3580312 | 7015.1.1.0 ↗ | alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain | 0.84 | 73.0 | 5.68e-01 | 100.0% | 47.4% |
| 4674184 | 2004.1.1.798 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_15, AAA_29 | 0.81 | 71.0 | 4.10e-01 | 100.0% | 11.3% |
| 3959854 | 3997.1.1.0 ↗ | alpha arrays › Helical insertion domain in magnesium chelatase catalytic subunit › Helical insertion domain in magnesium chelatase catalytic subunit › Helical insertion domain in magnesium chelatase catalytic subunit | 0.81 | 68.0 | 4.39e-01 | 93.2% | 21.6% |
| 3701245 | 604.7.1.1 ↗ | alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › TBCA | 0.80 | 69.0 | 5.19e-01 | 100.0% | 40.0% |
| 3787792 | 5041.1.1.1 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C | 0.72 | 61.0 | 4.93e-01 | 100.0% | 48.9% |
| 4009623 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.69 | 55.0 | 5.05e-01 | 100.0% | 69.2% |
| 4365052 | 5041.1.1.1 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C | 0.69 | 57.0 | 4.60e-01 | 100.0% | 50.5% |
| 5018020 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.66 | 56.0 | 5.39e-01 | 100.0% | 86.0% |