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KC465900.1__AGE60572.1__X__00040

Bact-Vir

KC465900.1__AGE60572.1__X__00040

Identity

Accession:
KC465900 ↗
Kingdom:
phage

Quality

90.2 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-67
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5z06B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.70 44.0 3.98e-01 100.0% 45.7%
7kseA02 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.69 61.0 4.72e-01 100.0% 90.4%
5vyqA01 3.40.50.170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain 0.68 53.0 3.88e-01 84.6% 35.0%
4nv1E01 3.40.50.170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain 0.68 53.0 3.81e-01 84.6% 33.9%
3zugB02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.61 47.0 3.69e-01 83.1% 88.7%
2qrdA00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.60 41.0 3.44e-01 70.8% 61.4%
4lugB00 3.90.80.10 Alpha Beta › Alpha-Beta Complex › Inorganic Pyrophosphatase › Inorganic pyrophosphatase 0.60 51.0 3.83e-01 100.0% 38.1%
4iqfB01 3.40.50.170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain 0.60 51.0 3.57e-01 95.4% 37.5%
2ox5B00 2.60.40.2470 Mainly Beta › Sandwich › Immunoglobulin-like › SoxY domain 0.59 40.0 3.44e-01 100.0% 42.7%
2j3wC00 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.59 42.0 3.35e-01 76.9% 37.8%
3eipA00 3.10.50.20 Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein 0.58 50.0 4.70e-01 100.0% 92.9%
1djsA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 42.0 3.71e-01 100.0% 50.0%
2mraA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.58 45.0 3.82e-01 100.0% 48.7%
8shiI01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 50.0 4.30e-01 100.0% 61.5%
3f8uB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 49.0 4.04e-01 100.0% 61.9%
6p3xB01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.57 49.0 3.67e-01 100.0% 51.4%
1ln0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.57 49.0 4.41e-01 100.0% 69.6%
2qlcA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.56 46.0 3.88e-01 98.5% 73.0%
2z5bB01 3.30.230.90 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.56 39.0 3.29e-01 73.8% 47.9%
3fw6A01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.56 37.0 3.18e-01 100.0% 38.5%
4l1dC00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 49.0 4.15e-01 100.0% 61.5%
2qyxA02 3.30.70.1360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › mj0159-like 0.56 40.0 3.43e-01 100.0% 45.1%
1wapA00 2.60.40.50 Mainly Beta › Sandwich › Immunoglobulin-like › TRAP-like 0.55 46.0 4.55e-01 100.0% 88.2%
4pjeE01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 46.0 4.01e-01 100.0% 60.2%
6rptC00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 41.0 3.53e-01 100.0% 48.2%
6a6yA00 2.60.40.1490 Mainly Beta › Sandwich › Immunoglobulin-like › Histone chaperone ASF1-like 0.55 44.0 3.48e-01 100.0% 40.1%
1nrjA00 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.55 42.0 3.34e-01 87.7% 89.1%
6j7cA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.54 42.0 3.31e-01 92.3% 36.7%
3omzA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 45.0 4.00e-01 100.0% 64.7%
5d2lE01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 46.0 3.98e-01 100.0% 62.0%
2xfaA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.53 44.0 3.52e-01 100.0% 43.4%
1js8B02 2.60.310.10 Mainly Beta › Sandwich › Hemocyanin; Chain: A, domain 2 › Haemocyanin C-terminal domain 0.53 45.0 3.94e-01 100.0% 61.0%
3wxmB02 3.30.420.60 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 0.52 42.0 3.60e-01 96.9% 77.0%
2hw4A01 3.50.20.20 Alpha Beta › 3-Layer(bba) Sandwich › Pyruvoyl-Dependent Histidine Decarboxylase; Chain B › Janus/Ocnus 0.52 44.0 3.81e-01 100.0% 60.0%
1tvdA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 44.0 3.76e-01 100.0% 61.2%
8ezmH02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 44.0 3.77e-01 100.0% 60.7%
4g7xB00 3.30.1150.10 Alpha Beta › 2-Layer Sandwich › Fusion Protein Consisting Of Minor Coat Protein, Glycine Rich Linker, Tola, And A His Tag; Chain: A; Domain 2 › 0.52 38.0 3.35e-01 80.0% 89.2%
2yrbA01 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.52 43.0 3.55e-01 100.0% 98.5%
5u3fB01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.52 42.0 3.40e-01 95.4% 66.4%
2h6cA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 38.0 3.05e-01 78.5% 93.8%
7tzeA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 43.0 3.76e-01 100.0% 63.3%
2xi9B01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 42.0 3.61e-01 95.4% 87.9%
2v72A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.50 42.0 3.42e-01 98.5% 58.4%
4fixA01 3.90.550.60 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › 0.50 44.0 2.71e-01 100.0% 20.1%
2kd7A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.50 37.0 2.90e-01 83.1% 44.0%
4mamB03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.50 37.0 2.87e-01 87.7% 59.6%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4927093 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.67 43.0 3.47e-01 73.8% 33.6%
4884395 7571.1.1.1 a/b three-layered sandwiches › Formyltransferase › Formyltransferase › Formyltransferase › Formyl_trans_N 0.66 51.0 3.76e-01 83.1% 35.8%
4629743 2492.1.1.9 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › RadC 0.65 48.0 3.89e-01 100.0% 39.3%
5013194 3115.4.1.0 a+b two layers › GP2-like › Uncharacterized conserved protein Il1583 › Uncharacterized conserved protein Il1583 0.65 49.0 5.22e-01 100.0% 98.2%
3478066 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 48.0 4.09e-01 100.0% 47.3%
4541077 3767.1.1.0 a+b two layers › Giardia Dicer N-terminal domain › Giardia Dicer N-terminal domain › Giardia Dicer N-terminal domain 0.65 47.0 3.73e-01 100.0% 36.4%
3573883 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.64 54.0 4.43e-01 100.0% 51.2%
4932870 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.62 47.0 4.42e-01 100.0% 67.5%
3722982 223.2.1.29 a+b three layers › Profilin-like › profilin-like › profilin-like › DENND11 0.62 43.0 3.46e-01 73.8% 83.7%
3891555 2004.1.1.26 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin 0.61 52.0 3.69e-01 100.0% 37.3%
4947650 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 42.0 3.60e-01 73.8% 91.3%
3255715 11.1.1.698 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_TgrO1 0.61 41.0 3.80e-01 100.0% 54.1%
4985317 4139.1.1.1 a+b two layers › AMMECR1-like › AMMECR1-like › AMMECR1-like › AMMECR1 0.61 50.0 4.44e-01 100.0% 62.0%
3781073 223.2.1.29 a+b three layers › Profilin-like › profilin-like › profilin-like › DENND11 0.60 41.0 3.29e-01 72.3% 89.3%
3990169 5067.1.1.0 alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain 0.60 50.0 2.83e-01 98.5% 15.9%
3741114 223.2.1.29 a+b three layers › Profilin-like › profilin-like › profilin-like › DENND11 0.60 45.0 3.54e-01 86.2% 45.0%
3882344 10.1.1.10 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › MAM 0.60 42.0 3.25e-01 100.0% 30.3%
3927415 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 51.0 4.47e-01 100.0% 62.5%
5047502 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 45.0 3.58e-01 84.6% 70.7%
2570568 11.1.1.14 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glyco_hydro_2 0.59 45.0 3.94e-01 100.0% 54.4%
3786765 223.2.1.25 a+b three layers › Profilin-like › profilin-like › profilin-like › Avl9 0.58 41.0 3.03e-01 73.8% 94.3%
3508713 382.1.1.25 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › YjeJ 0.58 48.0 4.04e-01 100.0% 52.5%
4280109 2492.1.1.9 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › RadC 0.58 43.0 3.65e-01 100.0% 44.0%
3172638 223.2.1.29 a+b three layers › Profilin-like › profilin-like › profilin-like › DENND11 0.58 42.0 3.10e-01 78.5% 80.5%
5005493 304.122.1.1 a+b two layers › Alpha-beta plaits › Nitrogen repressor-like proteins › Nitrogen repressor-like proteins › NRD1_2 0.58 45.0 3.73e-01 100.0% 45.6%
3472190 2492.1.1.4 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.57 48.0 3.18e-01 96.9% 24.3%
4947810 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 39.0 3.32e-01 73.8% 87.5%
3577596 304.112.1.0 a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.57 48.0 3.86e-01 100.0% 70.3%
5052185 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 40.0 3.21e-01 73.8% 83.1%
5049631 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 40.0 3.17e-01 75.4% 39.3%
4954229 304.122.1.1 a+b two layers › Alpha-beta plaits › Nitrogen repressor-like proteins › Nitrogen repressor-like proteins › NRD1_2 0.56 43.0 3.66e-01 100.0% 47.5%
3471405 223.7.1.1 a+b three layers › Profilin-like › FLJ32549 C-terminal domain-like › FLJ32549 C-terminal domain-like › C12orf66_like 0.56 38.0 3.10e-01 80.0% 35.4%
3211117 304.112.1.0 a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.56 48.0 4.04e-01 100.0% 90.4%
1097213 10.9.1.2 beta sandwiches › jelly-roll › C-terminal domain of mullusc hemocyanin › C-terminal domain of mullusc hemocyanin › Haemocyan_bet_s 0.55 47.0 4.16e-01 100.0% 96.1%
5022742 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 41.0 3.58e-01 100.0% 48.7%
4939566 304.122.1.1 a+b two layers › Alpha-beta plaits › Nitrogen repressor-like proteins › Nitrogen repressor-like proteins › NRD1_2 0.55 42.0 3.62e-01 100.0% 50.9%
4014244 4139.1.1.0 a+b two layers › AMMECR1-like › AMMECR1-like › AMMECR1-like 0.55 45.0 3.74e-01 100.0% 48.1%
3596272 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 41.0 2.96e-01 83.1% 32.3%
4949430 304.122.1.1 a+b two layers › Alpha-beta plaits › Nitrogen repressor-like proteins › Nitrogen repressor-like proteins › NRD1_2 0.54 42.0 3.60e-01 100.0% 49.2%
3490613 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.54 43.0 3.80e-01 96.9% 66.4%
4435677 2492.1.1.9 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › RadC 0.54 43.0 3.60e-01 98.5% 69.2%
4187720 206.1.3.2 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › GARS_A 0.54 41.0 2.85e-01 87.7% 72.7%
3397499 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 43.0 3.67e-01 100.0% 50.8%
5058066 2484.1.1.38 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2 0.53 43.0 3.68e-01 95.4% 53.0%
4927303 525.1.1.1 a+b two layers › Urease, gamma-subunit › Urease, gamma-subunit › Urease, gamma-subunit › Urease_gamma 0.53 43.0 3.69e-01 98.5% 90.8%
3639157 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 44.0 3.46e-01 100.0% 55.6%
3166161 272.1.1.2 a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA 0.53 39.0 3.60e-01 78.5% 100.0%
4961648 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 44.0 3.57e-01 100.0% 46.2%
3385499 272.1.1.1 a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_C 0.53 38.0 3.53e-01 83.1% 100.0%
3873369 11.1.1.99 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.53 44.0 4.04e-01 98.5% 76.7%
4363048 2492.1.1.9 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › RadC 0.53 43.0 3.61e-01 100.0% 72.3%
4314343 2484.1.1.38 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2 0.52 42.0 3.54e-01 96.9% 72.3%
3940983 11.2.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.52 44.0 3.56e-01 100.0% 98.6%
3493644 10.32.1.203 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin 0.51 43.0 3.31e-01 100.0% 47.9%