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KC542353.1__AGR46527.1__TW1_011__00011

Bact-Vir

KC542353.1__AGR46527.1__TW1_011__00011

Identity

Accession:
KC542353 ↗
Kingdom:
phage

Quality

87.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-99
PDB
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2co5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 64.0 6.29e-01 85.2% 92.4%
4rs8A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 63.0 6.44e-01 84.1% 91.7%
2qvoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 60.0 6.09e-01 80.7% 88.5%
4hw0C00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 62.0 6.08e-01 83.0% 79.6%
1yyvB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 60.0 5.50e-01 83.0% 71.4%
2rdpA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 60.0 5.09e-01 84.1% 55.0%
4asnA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 55.0 5.53e-01 76.1% 84.4%
3cjnA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 61.0 5.03e-01 85.2% 53.4%
5e1wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 59.0 4.71e-01 84.1% 47.6%
2pg4A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 57.0 5.65e-01 81.8% 87.9%
4hqeA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 57.0 5.41e-01 84.1% 79.0%
5dcaA11 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 52.0 4.87e-01 73.9% 90.5%
2fbhA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 56.0 4.83e-01 84.1% 59.1%
2obpA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 51.0 5.33e-01 75.0% 92.6%
5trdA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 55.0 5.60e-01 83.0% 96.4%
3m8eA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 53.0 5.10e-01 80.7% 76.2%
7txnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 51.0 5.13e-01 77.3% 81.1%
5xyiK00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 57.0 5.70e-01 94.3% 86.7%
1r1uB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 53.0 5.24e-01 83.0% 79.6%
4gyiA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 56.0 5.48e-01 86.4% 86.0%
1tbxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 52.0 5.23e-01 84.1% 90.0%
3pqkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 51.0 4.95e-01 81.8% 74.7%
3cuoD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 50.0 4.92e-01 86.4% 75.5%
3zcoA00 1.10.10.2450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.65 51.0 4.49e-01 83.0% 89.8%
1r1tA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 51.0 4.96e-01 87.5% 75.5%
2b0lC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 47.0 4.66e-01 77.3% 77.7%
1z6tA04 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 46.0 4.69e-01 75.0% 80.0%
3l09A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 50.0 5.13e-01 84.1% 91.7%
2xzn800 3.30.63.20 Alpha Beta › 2-Layer Sandwich › Guanylate Kinase phosphate binding domain › 0.63 44.0 4.32e-01 77.3% 67.7%
4hkqA01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.60 35.0 2.95e-01 97.7% 35.4%
3zgyA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.60 41.0 3.51e-01 93.2% 47.3%
4d3dB02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.58 39.0 3.42e-01 93.2% 47.3%
1lxjA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 33.0 3.13e-01 97.7% 48.5%
4n3pA02 3.65.10.10 Alpha Beta › Alpha-beta prism › UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain › Enolpyruvate transferase domain 0.57 47.0 3.60e-01 92.0% 94.3%
2lsoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 45.0 4.66e-01 98.9% 90.4%
1jo0A00 3.30.110.60 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › YhbY-like 0.56 36.0 3.54e-01 93.2% 58.8%
2yvwA02 3.65.10.10 Alpha Beta › Alpha-beta prism › UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain › Enolpyruvate transferase domain 0.55 45.0 3.56e-01 93.2% 60.2%
4efjA01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.55 48.0 4.17e-01 100.0% 74.3%
8dy9I01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.55 44.0 3.43e-01 89.8% 40.8%
1dq3A03 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.55 40.0 4.04e-01 78.4% 93.1%
2wa0A01 1.10.10.1200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › MAGE homology domain, winged helix WH1 motif 0.54 41.0 3.94e-01 93.2% 71.3%
5hn3A00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.54 39.0 2.62e-01 75.0% 33.1%
1af5A00 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.54 46.0 4.17e-01 97.7% 78.6%
2v1nA01 1.10.10.2030 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DNA/RNA-binding protein Kin17, conserved domain 0.53 40.0 3.89e-01 81.8% 83.2%
3wrwA02 3.40.50.12030 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Uncharacterised protein family UPF0261, NC domain 0.53 46.0 3.47e-01 96.6% 55.9%
2ab5A02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.52 44.0 3.95e-01 100.0% 82.1%
3lduA01 3.30.2130.30 Alpha Beta › 2-Layer Sandwich › VC0802-like › 0.50 40.0 3.28e-01 90.9% 96.7%
ECOD (72)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4251909 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.83 68.0 6.96e-01 85.2% 98.8%
4944350 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.81 63.0 6.52e-01 80.7% 92.8%
5042411 101.1.2.150 alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.81 65.0 6.69e-01 84.1% 91.8%
5069873 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.81 64.0 6.56e-01 83.0% 91.8%
3946321 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.80 52.0 5.92e-01 73.9% 89.2%
4937876 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.79 63.0 5.56e-01 84.1% 66.4%
5077445 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.79 63.0 5.11e-01 83.0% 56.2%
4945099 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.79 63.0 5.48e-01 83.0% 69.6%
4986510 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.79 63.0 5.17e-01 84.1% 56.0%
4939406 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.79 63.0 4.91e-01 84.1% 44.0%
5006536 101.1.2.150 alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.78 63.0 6.30e-01 84.1% 87.8%
4929096 101.1.2.150 alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.78 59.0 5.81e-01 79.5% 76.8%
5031727 101.1.2.150 alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.77 61.0 5.96e-01 83.0% 87.4%
4927802 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.77 61.0 4.94e-01 84.1% 47.5%
5049162 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.76 62.0 4.88e-01 85.2% 65.9%
5046626 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.76 62.0 5.00e-01 85.2% 69.7%
3942501 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 56.0 5.58e-01 77.3% 93.3%
4968041 101.1.2.26 alpha arrays › HTH › HTH › winged helix domain › HxlR 0.75 60.0 5.00e-01 84.1% 55.9%
4963095 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.75 62.0 5.72e-01 87.5% 84.4%
3979431 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.75 59.0 4.82e-01 81.8% 56.0%
3951258 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.75 59.0 4.78e-01 81.8% 54.7%
4958659 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.74 56.0 5.59e-01 79.5% 82.2%
4990701 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.74 59.0 5.11e-01 84.1% 89.2%
5020805 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.74 54.0 5.16e-01 76.1% 70.0%
2684 101.1.2.221 alpha arrays › HTH › HTH › winged helix domain › ArnR1-like_WHD 0.74 57.0 5.63e-01 81.8% 87.0%
3960412 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 57.0 4.76e-01 81.8% 58.6%
4971296 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 52.0 5.45e-01 75.0% 81.2%
4941351 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 53.0 5.40e-01 76.1% 85.9%
4961047 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.72 52.0 5.33e-01 76.1% 83.5%
2725 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 51.0 5.33e-01 75.0% 92.6%
3279731 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.71 56.0 5.53e-01 84.1% 77.9%
5047052 101.1.2.673 alpha arrays › HTH › HTH › winged helix domain › HTH_HVO_0163_N 0.71 53.0 4.21e-01 78.4% 43.5%
4992965 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 64.0 5.65e-01 100.0% 92.8%
5012277 101.1.2.904 alpha arrays › HTH › HTH › winged helix domain › HTH_38 0.69 51.0 5.53e-01 77.3% 90.7%
4997011 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 57.0 4.04e-01 94.3% 31.7%
5027113 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 51.0 5.35e-01 81.8% 86.3%
4982733 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 54.0 5.36e-01 81.8% 87.8%
3471467 101.1.2.169 alpha arrays › HTH › HTH › winged helix domain › PheRS_DBD3 0.68 45.0 4.26e-01 72.7% 56.2%
3493123 101.1.1.321 alpha arrays › HTH › HTH › Three-helical HTH › PheRS_DBD3 0.67 45.0 4.22e-01 72.7% 56.2%
4941357 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 52.0 5.45e-01 83.0% 91.3%
3434870 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.67 48.0 5.03e-01 75.0% 98.8%
5077868 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 47.0 5.42e-01 89.8% 100.0%
4998646 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.65 49.0 4.93e-01 98.9% 77.8%
4979355 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 49.0 4.52e-01 78.4% 69.1%
3247158 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 45.0 4.89e-01 97.7% 85.3%
4945656 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 46.0 3.75e-01 100.0% 41.2%
5047951 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 55.0 4.29e-01 96.6% 51.1%
4979350 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 52.0 4.70e-01 89.8% 79.2%
5067666 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.63 54.0 5.22e-01 93.2% 86.0%
5066770 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.63 48.0 4.73e-01 89.8% 74.7%
4940693 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 54.0 5.20e-01 93.2% 85.0%
5029842 101.1.2.645 alpha arrays › HTH › HTH › winged helix domain › HTH_40 0.62 47.0 4.47e-01 80.7% 76.2%
4999183 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 47.0 4.67e-01 81.8% 78.9%
149370 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.61 45.0 4.15e-01 84.1% 58.8%
5044385 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.61 51.0 3.82e-01 89.8% 91.4%
4068860 101.1.2.54 alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R 0.61 50.0 4.47e-01 87.5% 90.0%
3380214 207.1.1.230 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › WHD_ROQ1 0.61 50.0 3.29e-01 89.8% 22.4%
5070090 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.60 51.0 4.95e-01 96.6% 82.0%
3646165 101.1.2.245 alpha arrays › HTH › HTH › winged helix domain › PORR 0.60 45.0 4.37e-01 80.7% 72.0%
5074663 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 50.0 5.13e-01 97.7% 94.1%
4942265 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 49.0 5.01e-01 89.8% 94.1%
5066501 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.59 53.0 4.12e-01 100.0% 82.6%
4998543 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 47.0 4.42e-01 93.2% 70.9%
3630104 192.24.1.6 alpha bundles › Long alpha-hairpin › RPC62 helical hairpin domain › RPC62 helical hairpin domain › RNA_pol_Rpc82, HTH_9, POLR3C_WHD 0.58 52.0 3.42e-01 100.0% 94.7%
3223457 101.1.2.661 alpha arrays › HTH › HTH › winged helix domain › HTH_9, POLR3C_WHD 0.58 52.0 3.64e-01 100.0% 92.9%
5057802 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.56 52.0 4.45e-01 100.0% 90.4%
4940512 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 51.0 4.37e-01 100.0% 82.9%
4088598 242.1.1.6 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_WhiA 0.53 45.0 4.28e-01 100.0% 81.0%
4222799 242.1.1.1 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 0.53 46.0 3.90e-01 100.0% 65.2%
None 0.53 46.0 2.84e-01 100.0% 91.1%
3785509 101.1.2.113 alpha arrays › HTH › HTH › winged helix domain › RNase_H2-Ydr279 0.52 43.0 3.41e-01 96.6% 84.4%
4998545 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 45.0 2.80e-01 95.5% 41.8%