←Back to structures

KC542353.1__AGR46535.1__TW1_019__00019

Bact-Vir

KC542353.1__AGR46535.1__TW1_019__00019

Identity

Accession:
KC542353 ↗
Kingdom:
phage

Quality

55.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pseudoalteromonas_phage_TW1

TaxID: 1366055

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-55
PDB
D2 medium residues 60-121
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4oj5A02 2.10.10.80 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › 0.81 70.0 6.66e-01 91.9% 84.5%
2v3jA01 3.40.1280.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain 0.58 47.0 3.50e-01 100.0% 60.1%
3ktzA01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.56 42.0 3.14e-01 82.3% 92.9%
1e4eA03 3.40.50.20 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 47.0 3.93e-01 100.0% 56.7%
2yfsA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.56 41.0 2.48e-01 80.6% 47.9%
3ctkA01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.56 41.0 3.13e-01 82.3% 94.0%
3bg1B01 6.20.50.170 Special › Other non-globular › N-terminal domain of TfIIb › 0.54 29.0 3.20e-01 80.6% 61.2%
4o2tA00 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.53 44.0 3.25e-01 93.5% 78.0%
4mptA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.52 36.0 2.82e-01 87.1% 32.0%
1r8nA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.50 41.0 3.00e-01 91.9% 96.2%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3057047 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.66 52.0 5.02e-01 88.7% 95.7%
3955550 3761.1.1.0 ↗ beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related 0.58 38.0 3.52e-01 90.3% 51.2%
137877 292.1.1.1 ↗ a+b two layers › RIP/Polo-box domain › Ribosome inactivating proteins (RIP) › Ribosome inactivating proteins (RIP) › RIP 0.55 41.0 2.81e-01 82.3% 62.5%
3394097 7502.1.1.0 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.53 44.0 3.81e-01 95.2% 83.0%
3737235 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.50 33.0 3.34e-01 85.5% 66.2%
4957015 2007.1.2.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.50 42.0 2.98e-01 93.5% 33.7%
3989371 1.1.9.20 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 0.50 39.0 3.94e-01 90.3% 100.0%
3407118 2007.1.2.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.50 40.0 2.93e-01 91.9% 38.9%
D3 medium residues 197-330
PDB
Domain cluster: rep: NC_047832.1__YP_009790824.1__HOR83_gp38__00038__D388-573
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF12708.13 best Pect-lyase_RHGA_epim 45.9 8.60e-12 93.3% 60.6%
D4 medium residues 331-517
PDB
D5 medium residues 518-658
PDB