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KC595278.1AGR46245.1StauST398-4_0023__00023

Bact-Vir

KC595278.1__AGR46245.1__StauST398-4_0023__00023

Identity

Accession:: KC595278 ↗
Kingdom:: phage

Quality

74.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Biseptimavirus› Staphylococcus_phage_StauST398-4

TaxID: 1308896

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 55-140

PDB

Domain cluster: rep: MK448727.1__QBX16890.1__Javan291_0014__00014__D161-249

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF07261.17 best	DnaB_2	54.0	1.60e-14	87.2%	98.7%

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2i5uA00	1.10.10.630	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DnaD domain-like	0.93	71.0	7.51e-01	79.1%	96.1%
2zc2A00	1.10.10.630	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DnaD domain-like	0.89	73.0	7.77e-01	86.0%	97.3%
1eo0A00	1.20.930.10	Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	0.62	46.0	4.80e-01	83.7%	88.3%
2kebA00	1.10.8.530	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › DNA polymerase alpha-primase, subunit B, N-terminal domain	0.62	48.0	5.06e-01	89.5%	94.9%
2ja2A04	1.10.8.70	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1	0.58	33.0	3.99e-01	70.9%	92.3%
3oz2A01	3.50.50.60	Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain	0.53	44.0	3.34e-01	97.7%	90.7%
2w0gA00	1.20.58.610	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Cdc37, Hsp90 binding domain	0.50	38.0	3.34e-01	81.4%	84.5%

ECOD (14)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3114	4230.1.1.3 ↗	alpha arrays › DnaD domain › DnaD domain › DnaD domain › DnaB_2	0.93	71.0	7.64e-01	79.1%	100.0%
3989035	4230.1.1.3 ↗	alpha arrays › DnaD domain › DnaD domain › DnaD domain › DnaB_2	0.88	78.0	7.55e-01	95.3%	85.3%
4048400	4230.1.1.3 ↗	alpha arrays › DnaD domain › DnaD domain › DnaD domain › DnaB_2	0.86	73.0	7.36e-01	90.7%	90.6%
3587918	4230.1.1.3 ↗	alpha arrays › DnaD domain › DnaD domain › DnaD domain › DnaB_2	0.85	78.0	7.56e-01	100.0%	89.5%
4498620	4230.1.1.3 ↗	alpha arrays › DnaD domain › DnaD domain › DnaD domain › DnaB_2	0.85	64.0	7.00e-01	81.4%	97.1%
4042821	4230.1.1.0 ↗	alpha arrays › DnaD domain › DnaD domain › DnaD domain	0.77	66.0	6.12e-01	91.9%	76.2%
4123695	148.1.3.0 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain	0.67	47.0	5.05e-01	76.7%	90.0%
4956905	103.2.1.2 ↗	alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone	0.62	42.0	4.38e-01	70.9%	85.0%
5001059	103.2.1.2 ↗	alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone	0.61	41.0	4.30e-01	70.9%	83.7%
3587982	4125.1.1.3 ↗	alpha superhelices › BH3980-like › BH3980-like › BH3980-like › DUF1129	0.56	41.0	4.31e-01	79.1%	96.0%
4927457	2003.1.1.0 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains	0.54	40.0	2.66e-01	77.9%	60.8%
3592139	108.1.1.0 ↗	alpha arrays › EF-hand › EF-hand-related › EF-hand	0.54	38.0	3.48e-01	72.1%	84.3%
3856811	103.1.1.3 ↗	alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › CRAL_TRIO_N	0.53	40.0	4.15e-01	81.4%	100.0%
4494455	192.5.1.34 ↗	alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › MSP1_C	0.50	33.0	3.15e-01	100.0%	57.0%