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KC595516.1__AGR47406.1__EMERY_76__00076
Bact-VirKC595516.1__AGR47406.1__EMERY_76__00076
Identity
- Accession:
- KC595516 ↗
- Kingdom:
- phage
Quality
69.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 75-124
Domain cluster:
representative
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2zxqA06 | 1.20.1270.70 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle | 0.70 | 61.0 | 5.58e-01 | 100.0% | 83.3% |
| 1kblA05 | 1.20.80.30 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › | 0.64 | 51.0 | 4.48e-01 | 100.0% | 62.9% |
| 3cl3A01 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.62 | 49.0 | 4.38e-01 | 100.0% | 76.2% |
| 2z3xA00 | 6.10.10.80 | Special › Helix non-globular › Helicase, Ruva Protein; domain 3 › Small, acid-soluble spore protein, alpha/beta type-like | 0.61 | 46.0 | 4.57e-01 | 90.0% | 83.9% |
| 3qvmB00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.60 | 41.0 | 2.63e-01 | 74.0% | 31.4% |
| 3e3vA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 43.0 | 4.17e-01 | 78.0% | 69.6% |
| 6xxvC00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.58 | 41.0 | 3.23e-01 | 76.0% | 36.0% |
| 1vq8V00 | 1.10.287.310 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.58 | 39.0 | 3.63e-01 | 72.0% | 69.2% |
| 2hydA01 | 1.20.1560.10 | Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain | 0.57 | 47.0 | 2.92e-01 | 100.0% | 70.6% |
| 2gtsA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.56 | 38.0 | 3.35e-01 | 72.0% | 50.6% |
| 3ay5A01 | 1.20.1420.10 | Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain | 0.54 | 44.0 | 3.43e-01 | 100.0% | 57.9% |
| 4okvE00 | 6.10.140.1890 | Special › Helix non-globular › Helix Hairpins › | 0.54 | 37.0 | 3.46e-01 | 74.0% | 60.0% |
| 1b06A01 | 1.10.287.990 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain | 0.53 | 35.0 | 3.24e-01 | 70.0% | 53.7% |
| 1irxA04 | 1.10.10.770 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.52 | 37.0 | 3.03e-01 | 80.0% | 38.0% |
| 4c2dA02 | 1.10.101.10 | Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD | 0.52 | 41.0 | 3.68e-01 | 100.0% | 85.9% |
| 3v5uA01 | 6.10.280.80 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › NCX, peripheral helical region | 0.51 | 34.0 | 2.98e-01 | 70.0% | 78.9% |
| 1a62A01 | 1.10.720.10 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › | 0.50 | 35.0 | 3.60e-01 | 70.0% | 100.0% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3589701 | 632.24.1.3 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › GBS CAMP factor C-terminal domain › GBS CAMP factor C-terminal domain › ORF6C | 0.78 | 67.0 | 5.69e-01 | 100.0% | 78.8% |
| 5028668 | 206.1.3.3 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › PPDK_N | 0.78 | 67.0 | 3.99e-01 | 100.0% | 14.9% |
| 3598953 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.76 | 66.0 | 3.90e-01 | 100.0% | 14.2% |
| 4010451 | 3788.1.1.15 ↗ | alpha bundles › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › PF27202 | 0.70 | 60.0 | 5.36e-01 | 100.0% | 70.7% |
| 4428371 | 130.1.1.3 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Rho_N | 0.67 | 44.0 | 4.53e-01 | 100.0% | 75.6% |
| 4991809 | 206.1.3.3 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › PPDK_N | 0.65 | 51.0 | 3.10e-01 | 100.0% | 13.7% |
| 3812592 | 109.4.1.1948 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Zw10_middle | 0.64 | 40.0 | 2.81e-01 | 72.0% | 19.4% |
| 3220017 | 174.1.1.13 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › DUF2700 | 0.63 | 42.0 | 3.03e-01 | 74.0% | 24.1% |
| 4928145 | 547.1.1.1 ↗ | alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer | 0.59 | 43.0 | 3.80e-01 | 82.0% | 52.5% |
| 3206816 | 633.6.1.0 ↗ | alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like | 0.58 | 48.0 | 3.41e-01 | 100.0% | 43.4% |
| 3229078 | 150.5.1.124 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › Claudin_3 | 0.54 | 38.0 | 3.14e-01 | 76.0% | 81.1% |
| 3308343 | 1008.1.1.27 ↗ | alpha bundles › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › COPIIcoated_ERV | 0.54 | 38.0 | 3.36e-01 | 76.0% | 52.0% |
| 5029513 | 192.4.1.1 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › Ribosomal_L29 | 0.53 | 38.0 | 3.42e-01 | 76.0% | 74.3% |
| 3265387 | 603.1.1.63 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Adaptin_binding | 0.53 | 36.0 | 3.46e-01 | 72.0% | 61.7% |
| 4094168 | 547.1.1.1 ↗ | alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer | 0.53 | 36.0 | 2.98e-01 | 74.0% | 39.0% |
| 3480954 | 130.1.1.2 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › LEM | 0.52 | 35.0 | 3.60e-01 | 72.0% | 100.0% |
| 3268369 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.51 | 42.0 | 3.54e-01 | 100.0% | 77.9% |