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KC595516.1__AGR47410.1__EMERY_80__00080

Bact-Vir

KC595516.1__AGR47410.1__EMERY_80__00080

Identity

Accession:
KC595516 ↗
Kingdom:
phage

Quality

91.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Brevibacillus_phage_Emery

TaxID: 1296660

Cluster

View cluster (11 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-20_100-167
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4i68A00 3.30.70.1800 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 46.0 4.53e-01 90.6% 70.0%
1weyA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.64 48.0 4.51e-01 80.0% 76.9%
3ofgB00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.63 46.0 4.65e-01 78.8% 94.3%
2kl8A00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.63 44.0 4.49e-01 74.1% 87.1%
1rzmA01 3.30.70.1140 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Phospho-2-dehydro-3-deoxyheptonate aldolase; domain 1 0.63 50.0 5.18e-01 87.1% 98.8%
4fh3A02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.62 47.0 4.17e-01 81.2% 94.4%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.61 43.0 3.48e-01 74.1% 44.3%
3aqoA01 3.30.70.3400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 42.0 4.37e-01 75.3% 97.5%
2xhcA01 3.30.70.940 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › NusG, N-terminal domain 0.59 48.0 4.65e-01 90.6% 92.6%
2epjA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.58 37.0 2.90e-01 98.8% 30.7%
6u9hF02 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.57 40.0 4.17e-01 75.3% 80.5%
2lfvA00 3.30.70.1070 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sporulation related repeat 0.57 45.0 4.27e-01 88.2% 74.5%
1zcdA00 1.20.1530.10 Mainly Alpha › Up-down Bundle › Na+/H+ antiporter like fold › Na+/H+ antiporter like domain 0.56 49.0 3.21e-01 97.6% 73.4%
1zhvA00 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.56 40.0 3.46e-01 75.3% 50.7%
4erdA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.55 47.0 4.40e-01 100.0% 94.4%
1x60A01 3.30.70.1070 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sporulation related repeat 0.53 38.0 4.04e-01 75.3% 95.8%
4zm3B01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.53 39.0 3.34e-01 77.6% 66.9%
3tvzB00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 44.0 3.83e-01 97.6% 92.0%
5koxA02 3.30.70.2450 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 36.0 3.68e-01 75.3% 93.0%
2v4jB03 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 35.0 3.80e-01 70.6% 98.5%
3h6qA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.50 36.0 3.00e-01 77.6% 89.3%
2g0iA00 3.30.70.1490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp 0.50 35.0 3.25e-01 72.9% 84.7%
2ljwA00 3.30.428.40 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › Protein of unknown function DUF3067 0.50 37.0 3.52e-01 78.8% 82.7%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4880634 223.3.1.1 ↗ a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase 0.67 22.0 2.67e-01 95.3% 35.6%
4932448 304.28.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.64 46.0 4.54e-01 75.3% 91.1%
279560 304.115.1.1 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in DAHP synthase › Ferredoxin-like domain in DAHP synthase › DAHP_snth_FXD 0.63 45.0 4.97e-01 74.1% 94.1%
4416593 304.28.1.4 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › SecD_1st 0.63 45.0 4.44e-01 75.3% 92.2%
4502232 304.162.1.1 ↗ a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH 0.63 43.0 4.41e-01 70.6% 96.2%
3603400 304.120.1.6 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › ThiI_fer 0.63 43.0 4.52e-01 70.6% 100.0%
4538961 304.14.1.1 ↗ a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR 0.62 43.0 4.52e-01 70.6% 100.0%
1036625 3122.1.1.1 ↗ a+b complex topology › MESD › MESD › MESD › Mesd 0.62 46.0 4.75e-01 78.8% 96.2%
5054303 304.28.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.61 44.0 4.52e-01 75.3% 88.7%
4028252 304.116.1.1 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in release factor › Ferredoxin-like domain in release factor › PCRF 0.61 43.0 3.81e-01 74.1% 84.0%
5034602 304.24.1.5 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › Trm5_N 0.61 39.0 4.45e-01 82.4% 93.3%
4682115 304.28.1.4 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › SecD_1st 0.60 43.0 4.26e-01 74.1% 86.7%
141070 223.3.1.1 ↗ a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase 0.60 22.0 2.67e-01 96.5% 40.4%
3985253 304.28.1.8 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › YggL_50S_bp 0.59 42.0 3.97e-01 75.3% 77.7%
3268326 5001.1.1.10 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Ceramidase 0.57 35.0 2.38e-01 83.5% 18.6%
3659633 304.7.1.2 ↗ a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Inhibitor_I9 0.56 43.0 4.20e-01 83.5% 97.9%
3867638 109.4.1.32 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MIF4G 0.56 43.0 2.94e-01 83.5% 44.5%
4027252 304.48.1.4 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Guanylate_cyc 0.55 44.0 3.00e-01 87.1% 45.5%
5055279 1075.1.2.0 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain 0.55 39.0 2.87e-01 72.9% 79.0%
4990135 7527.1.1.2 ↗ a/b three-layered sandwiches › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › CoA_transf_3 0.54 34.0 2.22e-01 81.2% 14.5%
3967024 244.1.1.4 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › DAO 0.54 39.0 3.26e-01 75.3% 57.3%
3168821 101.1.10.1 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.54 44.0 3.07e-01 92.9% 94.7%
3932224 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.53 41.0 2.75e-01 81.2% 48.4%
3453496 109.4.1.1254 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.53 43.0 2.81e-01 92.9% 48.5%
4385553 304.48.1.48 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › GGDEF_2 0.52 38.0 3.08e-01 77.6% 94.5%
3672161 109.4.1.1254 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.52 43.0 2.99e-01 92.9% 57.7%
5060820 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.51 40.0 2.49e-01 83.5% 42.6%
2440220 223.3.1.1 ↗ a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase 0.51 21.0 2.42e-01 97.6% 39.0%
D2 high residues 23-94
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6a80A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.60 35.0 2.95e-01 90.3% 33.9%
4jcmA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.55 46.0 3.03e-01 100.0% 50.9%
3u1kB04 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.55 39.0 3.98e-01 100.0% 76.4%
3pqkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 41.0 3.75e-01 81.9% 78.8%
3bjaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 43.0 3.66e-01 97.2% 67.6%
3wrwA02 3.40.50.12030 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Uncharacterised protein family UPF0261, NC domain 0.52 44.0 3.24e-01 100.0% 61.4%
3to7A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 36.0 3.55e-01 75.0% 91.4%
4az3A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 34.0 2.40e-01 100.0% 18.9%
3broD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 42.0 3.63e-01 98.6% 71.6%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4882551 1.1.5.5 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pico_P2A 0.60 39.0 3.12e-01 75.0% 31.5%
4467547 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.60 38.0 3.95e-01 100.0% 70.8%
4991791 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 44.0 4.05e-01 83.3% 88.4%
3645708 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.56 40.0 3.51e-01 77.8% 80.0%
5078889 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 41.0 3.49e-01 81.9% 64.8%
5001365 4271.1.1.0 ↗ alpha complex topology › PriB N-terminal domain-like › PriB N-terminal domain-like › PriB N-terminal domain-like 0.53 40.0 3.03e-01 83.3% 74.4%
4042477 4354.1.1.1 ↗ a+b two layers › TRCF domain › TRCF domain › TRCF domain › TRCF 0.52 42.0 3.49e-01 95.8% 85.3%
5026112 3457.1.1.0 ↗ alpha bundles › GxGD membrane protease › GxGD membrane protease › GxGD membrane protease 0.51 33.0 2.45e-01 76.4% 21.8%
3311421 4271.1.1.3 ↗ alpha complex topology › PriB N-terminal domain-like › PriB N-terminal domain-like › PriB N-terminal domain-like › DNA_primase_lrg_N 0.51 43.0 3.01e-01 93.1% 34.8%
1144860 7579.1.1.5 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S10 0.51 34.0 2.35e-01 100.0% 18.8%
3291498 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 43.0 3.55e-01 100.0% 70.3%
4033553 304.26.1.1 ↗ a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like › Thiamine_BP 0.51 34.0 3.10e-01 100.0% 47.6%
4563340 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.51 36.0 3.69e-01 76.4% 87.1%
3181789 601.23.1.4 ↗ alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III 0.51 40.0 2.81e-01 95.8% 24.1%