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KC685370.1__AGI10629.1__mgb1_040__00039

Bact-Vir

KC685370.1__AGI10629.1__mgb1_040__00039

Identity

Accession:
KC685370 ↗
Kingdom:
phage

Quality

77.0 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-59_78-97
PDB
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1yb2A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.73 61.0 4.33e-01 91.0% 63.5%
6bnzA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.73 40.0 3.26e-01 87.2% 30.0%
3hyiA01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.70 46.0 3.46e-01 87.2% 27.7%
5fiiB00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.68 43.0 4.35e-01 78.2% 64.1%
1y7pB01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.67 44.0 4.44e-01 79.5% 66.3%
5hfjC00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.66 53.0 3.87e-01 85.9% 40.7%
3e05B00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.65 54.0 4.13e-01 94.9% 88.0%
1in0A02 3.30.70.990 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YajQ-like, domain 2 0.64 47.0 4.45e-01 85.9% 66.3%
2as0A03 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.63 54.0 3.97e-01 97.4% 86.7%
7f4oA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.63 50.0 3.71e-01 85.9% 44.9%
1vk3A03 3.30.1330.10 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › PurM-like, N-terminal domain 0.62 50.0 4.08e-01 88.5% 89.1%
2gjvA00 3.30.2000.10 Alpha Beta › 2-Layer Sandwich › STM4215-like › Phage tail protein-like 0.62 52.0 4.25e-01 89.7% 72.1%
2jz7A00 3.30.1660.30 Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Selenium-binding protein 0.61 45.0 4.50e-01 100.0% 75.3%
2vfrA04 3.30.70.2520 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 45.0 4.23e-01 78.2% 64.9%
3b49A00 3.20.80.10 Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain 0.61 50.0 3.79e-01 93.6% 99.0%
1ne2B00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.61 52.0 3.95e-01 94.9% 89.6%
2vdvE01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.60 49.0 3.74e-01 91.0% 86.0%
1gx1A00 3.30.1330.50 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 0.59 43.0 3.48e-01 78.2% 100.0%
4qttB00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.59 50.0 3.89e-01 94.9% 93.1%
1nvmB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.59 47.0 3.84e-01 89.7% 81.8%
2pb7A01 2.30.280.10 Mainly Beta › Roll › PUA domain-like › SRA-YDG 0.59 48.0 3.69e-01 89.7% 60.5%
1b24A01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.58 45.0 4.21e-01 87.2% 67.4%
4acvA00 3.30.2000.30 Alpha Beta › 2-Layer Sandwich › STM4215-like › 0.58 50.0 4.28e-01 92.3% 68.9%
3qwuA03 3.30.70.2160 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 43.0 3.54e-01 79.5% 76.3%
4pioA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.56 50.0 3.81e-01 98.7% 93.4%
1dq3A03 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.56 41.0 3.99e-01 87.2% 70.1%
6izhE00 3.30.1330.40 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like 0.56 43.0 3.77e-01 84.6% 97.5%
4v2pA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.56 41.0 3.27e-01 78.2% 97.4%
5by7A01 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.55 46.0 3.60e-01 97.4% 92.1%
3gwaA01 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.55 46.0 3.65e-01 97.4% 90.9%
1xdzA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 39.0 2.82e-01 75.6% 66.8%
2dt8A02 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.54 44.0 3.85e-01 94.9% 88.5%
3h76A01 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.54 45.0 3.59e-01 97.4% 91.4%
3fysA02 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.53 45.0 3.84e-01 94.9% 88.4%
2rqlA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.53 34.0 3.25e-01 100.0% 53.7%
1mzjB01 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.53 43.0 3.46e-01 94.9% 90.1%
3rqwA01 2.70.170.10 Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain 0.53 43.0 3.31e-01 92.3% 63.7%
3kd4A03 2.60.120.1130 Mainly Beta › Sandwich › Jelly Rolls › 0.51 39.0 3.27e-01 83.3% 90.5%
4k59A00 2.60.40.4380 Mainly Beta › Sandwich › Immunoglobulin-like › Translational regulator CsrA 0.51 35.0 3.82e-01 76.9% 86.4%
1mgpA02 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.51 41.0 3.65e-01 92.3% 85.1%
2ou5A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 40.0 3.16e-01 88.5% 70.9%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4039974 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.71 49.0 4.28e-01 87.2% 48.7%
4976820 2003.1.5.46 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MTS 0.69 60.0 4.45e-01 96.2% 86.0%
3642698 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.69 42.0 4.81e-01 78.2% 87.3%
3605164 2003.1.5.63 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › CARME 0.69 59.0 3.87e-01 96.2% 69.3%
3595255 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.68 59.0 3.81e-01 97.4% 65.8%
4955506 2003.1.5.444 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DUF1156 0.68 61.0 3.79e-01 100.0% 99.1%
4406356 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.67 54.0 4.63e-01 87.2% 61.6%
3624850 331.9.1.9 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › PF26171 0.67 34.0 3.07e-01 85.9% 36.2%
4978232 2003.1.5.82 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 0.67 57.0 4.24e-01 94.9% 85.5%
3473469 301.7.1.0 a+b three layers › Bacillus chorismate mutase-like › YjgF-like › YjgF-like 0.67 50.0 4.12e-01 82.1% 88.0%
4943908 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.67 57.0 4.23e-01 94.9% 86.5%
5055893 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.67 60.0 3.80e-01 98.7% 99.7%
5022296 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.66 43.0 4.10e-01 87.2% 54.7%
4944480 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.65 48.0 4.30e-01 87.2% 55.5%
5055732 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.65 52.0 4.84e-01 88.5% 90.0%
3741555 4969.1.1.0 alpha bundles › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I 0.65 45.0 3.17e-01 76.9% 24.3%
4997602 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.64 52.0 4.69e-01 87.2% 67.6%
4448420 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 44.0 3.11e-01 76.9% 23.3%
3602395 872.3.1.1 a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_1 0.64 48.0 4.58e-01 79.5% 70.8%
3759055 304.114.1.0 a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.64 44.0 3.76e-01 76.9% 44.8%
3550113 4969.1.1.0 alpha bundles › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I 0.63 44.0 3.74e-01 76.9% 44.8%
5031812 2003.1.1.373 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › N6_N4_Mtase 0.63 55.0 3.29e-01 100.0% 84.5%
4081234 2003.1.5.233 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PF27593 0.63 53.0 3.65e-01 94.9% 73.5%
3377982 304.8.1.57 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_ACR_D1 0.63 43.0 4.15e-01 84.6% 62.2%
4306907 2003.1.5.17 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_5 0.63 54.0 4.07e-01 96.2% 93.8%
3738924 328.1.1.0 a+b two layers › IF3-like › AlbA-like › AlbA-like 0.62 49.0 4.74e-01 87.2% 100.0%
None 0.62 54.0 3.59e-01 97.4% 58.7%
4932762 2003.1.5.12 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_N4_Mtase 0.62 48.0 3.39e-01 83.3% 29.2%
4028387 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.61 44.0 4.20e-01 79.5% 63.2%
3957946 256.1.1.12 a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like › SOUL 0.61 44.0 4.25e-01 76.9% 71.1%
3783015 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.61 50.0 3.13e-01 91.0% 18.8%
3721393 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.61 44.0 3.84e-01 78.2% 61.6%
3959355 304.8.1.107 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ALO 0.61 44.0 3.64e-01 78.2% 43.1%
4809499 304.109.1.0 a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e 0.60 48.0 4.68e-01 87.2% 85.9%
3508551 304.114.1.0 a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.60 41.0 3.59e-01 76.9% 46.7%
5027606 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.60 47.0 4.07e-01 87.2% 57.6%
3377563 301.7.1.0 a+b three layers › Bacillus chorismate mutase-like › YjgF-like › YjgF-like 0.58 45.0 3.61e-01 84.6% 88.7%
3177328 70.3.1.1 beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.57 50.0 3.57e-01 100.0% 59.6%
3499602 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.57 42.0 3.93e-01 79.5% 62.0%
4058358 327.11.2.26 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_N4BP1_1st 0.57 42.0 4.19e-01 78.2% 77.5%
3176665 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.56 36.0 3.63e-01 84.6% 63.7%
3672064 314.1.1.4 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2c 0.56 48.0 3.34e-01 97.4% 74.4%
5023511 1.1.7.28 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel 0.55 42.0 3.79e-01 85.9% 72.2%
3430240 323.1.1.7 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Transferase 0.54 41.0 2.77e-01 84.6% 27.2%
3695778 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.54 39.0 3.30e-01 79.5% 71.0%
3617194 864.1.1.0 a+b two layers › DLC › DLC › DLC 0.53 46.0 3.95e-01 100.0% 90.0%
3684423 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.53 37.0 3.49e-01 78.2% 58.0%
3280774 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.53 41.0 3.24e-01 83.3% 78.8%
3485793 10.4.1.0 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.53 36.0 3.03e-01 73.1% 77.3%
4983965 7581.1.1.0 a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like 0.52 43.0 2.87e-01 92.3% 77.9%
5072969 7581.1.1.13 a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › ACP_syn_III 0.52 43.0 3.68e-01 97.4% 90.0%
3795203 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.52 46.0 3.13e-01 98.7% 34.8%
3239548 708.1.1.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.52 38.0 3.30e-01 80.8% 69.2%
4935707 7581.1.1.0 a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like 0.51 42.0 3.46e-01 97.4% 90.9%
3491068 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.51 44.0 2.99e-01 100.0% 29.3%
3401706 4.12.1.0 beta barrels › SH3 › Methuselah ectodomain › Methuselah ectodomain 0.50 45.0 3.85e-01 100.0% 87.2%