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KC688701.1__AGM14109.1__P2559Y_0046__00046

Bact-Vir

KC688701.1__AGM14109.1__P2559Y_0046__00046

Identity

Accession:
KC688701 ↗
Kingdom:
phage

Quality

92.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Croceibacter_phage_P2559Y

TaxID: 1327037

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-78
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3udcA02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.69 42.0 4.83e-01 80.3% 88.0%
2rcnA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 44.0 4.67e-01 70.4% 93.4%
2fjrA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.64 44.0 3.79e-01 87.3% 45.1%
6bogA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 41.0 4.62e-01 78.9% 90.4%
1ei5A02 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.63 47.0 4.55e-01 81.7% 85.4%
2qmiA02 2.40.128.210 Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain 0.62 44.0 4.02e-01 77.5% 80.0%
4hwmA00 2.40.128.500 Mainly Beta › Beta Barrel › Lipocalin › YedD-like protein 0.62 46.0 3.94e-01 80.3% 64.1%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.61 38.0 3.38e-01 78.9% 43.1%
3udfA03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 44.0 4.01e-01 76.1% 93.7%
3d0fA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 42.0 4.16e-01 70.4% 95.9%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.60 45.0 4.27e-01 80.3% 70.2%
2dgyA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 42.0 4.07e-01 74.6% 88.6%
3bb7A01 3.90.70.50 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Streptopain (SpeB) 0.59 44.0 3.27e-01 78.9% 32.8%
3j7yD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.58 44.0 4.20e-01 85.9% 70.4%
4qrlA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.57 42.0 3.71e-01 80.3% 91.8%
1rl2A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 33.0 3.67e-01 71.8% 75.0%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.55 39.0 4.02e-01 77.5% 78.8%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 44.0 4.25e-01 87.3% 78.5%
1yg9A02 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.55 38.0 3.17e-01 73.2% 84.6%
1vq8Q00 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.53 40.0 3.63e-01 80.3% 62.1%
5c94A00 2.40.10.250 Mainly Beta › Beta Barrel › Thrombin, subunit H › Replicase NSP9 0.50 34.0 3.02e-01 70.4% 88.8%
2a0aA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 42.0 3.52e-01 97.2% 91.6%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3486330 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 43.0 4.92e-01 80.3% 86.0%
4026678 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.69 45.0 4.55e-01 80.3% 67.1%
3299797 4.1.1.306 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_VIII-1_N 0.67 43.0 4.65e-01 77.5% 78.3%
4011957 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.67 48.0 4.09e-01 76.1% 53.9%
3998022 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.67 44.0 4.86e-01 83.1% 87.3%
3511510 2.1.1.70 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Prot_ATP_ID_OB_C 0.67 47.0 3.96e-01 74.6% 50.8%
4027422 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.66 45.0 4.95e-01 87.3% 90.9%
4368811 4.1.1.364 ↗ beta barrels › SH3 › SH3 › SH3 › GatD_N 0.65 43.0 4.84e-01 81.7% 89.1%
3817476 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.64 42.0 4.84e-01 77.5% 94.0%
3775592 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.58 51.0 2.75e-01 100.0% 5.1%
3630047 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 40.0 4.00e-01 74.6% 89.3%
3230584 2.1.1.318 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF7037 0.57 37.0 4.22e-01 88.7% 94.0%
3924633 267.1.1.3 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.56 42.0 2.95e-01 81.7% 93.2%
3574613 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.56 49.0 4.42e-01 98.6% 75.0%
4528716 3784.1.1.0 ↗ a+b two layers › Putative lipoprotein CPF_1278-related › Putative lipoprotein CPF_1278-related › Putative lipoprotein CPF_1278-related 0.54 37.0 3.32e-01 77.5% 48.6%
4945675 4.1.1.38 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.53 48.0 3.72e-01 100.0% 50.7%
3758025 4.1.1.38 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.52 47.0 3.93e-01 100.0% 63.3%
4947558 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.51 35.0 3.26e-01 71.8% 63.3%
4668790 3784.1.1.6 ↗ a+b two layers › Putative lipoprotein CPF_1278-related › Putative lipoprotein CPF_1278-related › Putative lipoprotein CPF_1278-related › PF26353 0.50 36.0 3.31e-01 76.1% 94.7%
826 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.50 42.0 3.52e-01 97.2% 91.6%