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KC699836.1__AGK86943.1__SIOphi_00675__00135
Bact-VirKC699836.1__AGK86943.1__SIOphi_00675__00135
Identity
- Accession:
- KC699836 ↗
- Kingdom:
- phage
Quality
79.5
mean pLDDT
Taxonomy
TaxID: 1285382
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-69
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1bebA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.69 | 53.0 | 4.10e-01 | 86.2% | 89.7% |
| 7wrgB01 | 3.40.850.10 | Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain | 0.66 | 58.0 | 3.73e-01 | 100.0% | 31.9% |
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.64 | 56.0 | 4.21e-01 | 100.0% | 94.0% |
| 3bb5A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.63 | 45.0 | 3.91e-01 | 76.9% | 98.1% |
| 4bwsF00 | 3.30.1490.40 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain | 0.63 | 45.0 | 4.55e-01 | 100.0% | 77.6% |
| 4a18X01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.62 | 45.0 | 4.28e-01 | 78.5% | 74.7% |
| 4makB00 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 54.0 | 5.12e-01 | 100.0% | 93.4% |
| 2mraA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.59 | 51.0 | 4.28e-01 | 100.0% | 86.3% |
| 5adxA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.58 | 45.0 | 3.41e-01 | 87.7% | 91.8% |
| 1qysA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.58 | 50.0 | 4.52e-01 | 100.0% | 96.7% |
| 4llgM00 | 3.10.20.510 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor | 0.57 | 39.0 | 4.19e-01 | 84.6% | 98.0% |
| 7mjrA02 | 2.60.120.240 | Mainly Beta › Sandwich › Jelly Rolls › Protective antigen, heptamerisation domain | 0.56 | 47.0 | 3.48e-01 | 100.0% | 84.0% |
| 3eipA00 | 3.10.50.20 | Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein | 0.56 | 43.0 | 3.96e-01 | 83.1% | 98.8% |
| 3rgzA02 | 3.30.1490.310 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.55 | 41.0 | 4.28e-01 | 86.2% | 88.5% |
| 2hpuA01 | 3.30.70.2060 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 46.0 | 4.67e-01 | 98.5% | 98.4% |
| 5mj3A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 36.0 | 3.41e-01 | 100.0% | 52.4% |
| 2jvfA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.55 | 47.0 | 4.25e-01 | 100.0% | 94.7% |
| 3uaqB01 | 2.40.128.250 | Mainly Beta › Beta Barrel › Lipocalin › | 0.55 | 39.0 | 3.36e-01 | 76.9% | 93.6% |
| 2jxtA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.55 | 39.0 | 3.74e-01 | 76.9% | 68.4% |
| 4wiwA02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.54 | 39.0 | 3.86e-01 | 76.9% | 100.0% |
| 2v3sA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.53 | 45.0 | 4.03e-01 | 100.0% | 72.9% |
| 2fd4A00 | 3.30.40.110 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › AvrPtoB, C-terminal domain | 0.52 | 39.0 | 3.39e-01 | 83.1% | 54.3% |
| 1wz3A01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.51 | 36.0 | 3.56e-01 | 93.8% | 67.6% |
| 1pfoA01 | 3.90.840.10 | Alpha Beta › Alpha-Beta Complex › HIV-1 Reverse Transcriptase; Chain A, domain 3 › Thiol-activated cytolysin superfamily/Thiol-activated cytolysin, alpha-beta domain | 0.51 | 43.0 | 3.22e-01 | 100.0% | 52.5% |
| 2y8yA02 | 3.30.70.1210 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 2 | 0.50 | 35.0 | 3.00e-01 | 75.4% | 93.9% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5040784 | 304.163.1.0 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain | 0.75 | 54.0 | 6.10e-01 | 76.9% | 98.0% |
| 3479367 | 822.1.1.1 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF | 0.66 | 49.0 | 4.97e-01 | 100.0% | 82.8% |
| 4981059 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.65 | 55.0 | 4.77e-01 | 100.0% | 59.0% |
| 2886668 | 807.1.1.1 ↗ | a+b two layers › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › CpcD | 0.65 | 45.0 | 4.98e-01 | 76.9% | 94.1% |
| 3945340 | 235.1.1.9 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT | 0.64 | 48.0 | 3.74e-01 | 100.0% | 36.0% |
| 3881059 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.63 | 49.0 | 4.76e-01 | 100.0% | 77.3% |
| 3927896 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.60 | 48.0 | 3.27e-01 | 89.2% | 58.0% |
| 3923043 | 4326.1.1.1 ↗ | a+b two layers › ERH-like › ERH-like › ERH-like › ER | 0.60 | 53.0 | 4.64e-01 | 100.0% | 87.0% |
| 3650990 | 274.1.1.44 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › DUF7804 | 0.60 | 51.0 | 4.16e-01 | 100.0% | 60.8% |
| 3276865 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.59 | 48.0 | 4.21e-01 | 92.3% | 94.0% |
| 3264069 | 822.1.1.2 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_2 | 0.58 | 44.0 | 4.59e-01 | 98.5% | 91.7% |
| 5081134 | 3986.2.1.0 ↗ | a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd | 0.58 | 44.0 | 4.51e-01 | 100.0% | 93.3% |
| 2905139 | 4187.1.1.2 ↗ | a+b two layers › NosL/MerB-like › NosL/MerB-like › NosL/MerB-like › NosL | 0.58 | 46.0 | 4.78e-01 | 95.4% | 100.0% |
| 5012895 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.58 | 41.0 | 4.41e-01 | 76.9% | 89.1% |
| 5025087 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.57 | 40.0 | 4.12e-01 | 72.3% | 98.3% |
| 3205036 | 4081.1.1.2 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT | 0.56 | 42.0 | 2.91e-01 | 100.0% | 22.0% |
| 4886584 | 3115.6.1.1 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › RpoY | 0.54 | 40.0 | 3.93e-01 | 83.1% | 74.3% |
| 2529893 | 284.2.1.0 ↗ | a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain | 0.54 | 39.0 | 3.84e-01 | 76.9% | 98.6% |
| 4867394 | 3820.1.1.1 ↗ | a+b complex topology › CRISPR-associated endonuclease Cas9 C-terminal domain › CRISPR-associated endonuclease Cas9 C-terminal domain › CRISPR-associated endonuclease Cas9 C-terminal domain › Cas9_PI | 0.54 | 38.0 | 3.36e-01 | 75.4% | 59.6% |
| 3258276 | 4081.1.1.2 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT | 0.52 | 41.0 | 2.90e-01 | 89.2% | 30.7% |
| 3207736 | 707.1.1.1 ↗ | beta complex topology › Hydrophobin › Hydrophobin › Hydrophobin › Hydrophobin | 0.52 | 43.0 | 3.86e-01 | 100.0% | 90.0% |