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KC751414.1__AGK87015.1__RIO-1_1__00001
Bact-VirKC751414.1__AGK87015.1__RIO-1_1__00001
Identity
- Accession:
- KC751414 ↗
- Kingdom:
- phage
Quality
90.5
mean pLDDT
Taxonomy
TaxID: 1316739
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-104
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1whrA00 | 3.30.1370.50 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain | 0.67 | 47.0 | 4.44e-01 | 85.3% | 60.5% |
| 1ug8A00 | 3.30.1370.50 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain | 0.62 | 45.0 | 4.81e-01 | 85.3% | 89.7% |
| 1bbyA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 37.0 | 4.31e-01 | 87.3% | 98.6% |
| 1t6sB02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 39.0 | 4.34e-01 | 85.3% | 96.1% |
| 2pw4A00 | 1.10.3300.10 | Mainly Alpha › Orthogonal Bundle › Jann2411-like fold › Jann2411-like domain | 0.56 | 45.0 | 3.70e-01 | 87.3% | 62.8% |
| 3ednA01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.54 | 37.0 | 3.45e-01 | 71.6% | 89.6% |
| 1bbhA00 | 1.20.120.10 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 | 0.53 | 47.0 | 4.37e-01 | 99.0% | 93.9% |
| 3zcoA00 | 1.10.10.2450 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.53 | 39.0 | 3.74e-01 | 81.4% | 89.0% |
| 3eyyA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 34.0 | 3.70e-01 | 77.5% | 82.9% |
| 2xigA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 34.0 | 3.59e-01 | 81.4% | 75.8% |
| 2kyyA00 | 3.30.950.30 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Schlafen, AAA domain | 0.52 | 38.0 | 3.40e-01 | 79.4% | 66.7% |
| 2jmcA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.51 | 33.0 | 3.71e-01 | 83.3% | 87.0% |
| 1nv8A02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 36.0 | 2.94e-01 | 82.4% | 37.6% |
| 2w9jA00 | 3.30.720.10 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 | 0.51 | 34.0 | 3.95e-01 | 75.5% | 98.6% |
| 5a48B00 | 3.30.420.610 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › LOTUS domain-like | 0.51 | 37.0 | 3.80e-01 | 85.3% | 80.2% |
| 2qpwA01 | 2.170.270.10 | Mainly Beta › Beta Complex › Beta-clip-like › SET domain | 0.51 | 36.0 | 3.45e-01 | 75.5% | 95.2% |
| 2hlyA00 | 3.10.550.10 | Alpha Beta › Roll › Atu2299-like › Hypothetical protein Atu2299 | 0.50 | 42.0 | 3.45e-01 | 95.1% | 100.0% |
| 3lpxB02 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.50 | 39.0 | 4.01e-01 | 96.1% | 91.5% |
| 2nzcB00 | 3.30.70.1150 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 | 0.50 | 33.0 | 3.60e-01 | 75.5% | 84.0% |
| 5dcaA11 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 40.0 | 3.97e-01 | 87.3% | 96.2% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3973365 | 205.1.1.22 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_21 | 0.57 | 32.0 | 3.34e-01 | 97.1% | 56.8% |
| 1100206 | 321.3.1.1 ↗ | a+b two layers › Glutamine synthetase-like › C-terminal domain in VgrG › C-terminal domain in VgrG › ACD | 0.56 | 38.0 | 2.66e-01 | 71.6% | 28.7% |
| 3765856 | 3937.1.1.1 ↗ | alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Connexin | 0.56 | 41.0 | 3.21e-01 | 76.5% | 65.7% |
| 3619851 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.54 | 33.0 | 3.46e-01 | 87.3% | 66.7% |
| 3180998 | 328.6.1.2 ↗ | a+b two layers › IF3-like › EPT/RTPC-like › EPT/RTPC-like › RTC | 0.54 | 46.0 | 3.37e-01 | 95.1% | 72.1% |
| 4361419 | 101.1.2.267 ↗ | alpha arrays › HTH › HTH › winged helix domain › Nse4_C | 0.54 | 38.0 | 3.67e-01 | 78.4% | 64.3% |
| None | — | 0.54 | 41.0 | 3.16e-01 | 81.4% | 99.1% | |
| 3603146 | 2008.1.1.95 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DpnII | 0.54 | 36.0 | 2.65e-01 | 70.6% | 24.2% |
| 3479207 | 328.6.1.2 ↗ | a+b two layers › IF3-like › EPT/RTPC-like › EPT/RTPC-like › RTC | 0.54 | 41.0 | 3.01e-01 | 81.4% | 53.4% |
| 3583168 | 101.1.2.490 ↗ | alpha arrays › HTH › HTH › winged helix domain › WHD_CHMP7 | 0.53 | 39.0 | 3.81e-01 | 78.4% | 70.9% |
| 3735293 | 101.1.2.312 ↗ | alpha arrays › HTH › HTH › winged helix domain › MSC | 0.53 | 46.0 | 3.44e-01 | 95.1% | 39.6% |
| 3611867 | 2484.1.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin | 0.53 | 40.0 | 2.77e-01 | 80.4% | 34.3% |
| 3704858 | 328.6.1.2 ↗ | a+b two layers › IF3-like › EPT/RTPC-like › EPT/RTPC-like › RTC | 0.53 | 41.0 | 3.09e-01 | 82.4% | 57.3% |
| 3597277 | 328.6.1.0 ↗ | a+b two layers › IF3-like › EPT/RTPC-like › EPT/RTPC-like | 0.53 | 40.0 | 3.07e-01 | 82.4% | 58.4% |
| 3167635 | 101.1.2.267 ↗ | alpha arrays › HTH › HTH › winged helix domain › Nse4_C | 0.53 | 37.0 | 3.57e-01 | 81.4% | 62.5% |
| 3561564 | 3937.1.1.1 ↗ | alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Connexin | 0.52 | 41.0 | 3.14e-01 | 84.3% | 71.4% |
| 4557416 | 3937.1.1.1 ↗ | alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Connexin | 0.52 | 41.0 | 3.12e-01 | 85.3% | 77.6% |
| 5079941 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 37.0 | 4.14e-01 | 89.2% | 100.0% |
| 3530824 | 101.1.2.267 ↗ | alpha arrays › HTH › HTH › winged helix domain › Nse4_C | 0.52 | 35.0 | 3.77e-01 | 76.5% | 87.5% |
| 4639306 | 109.4.1.1255 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N, Cnd1 | 0.51 | 41.0 | 2.55e-01 | 89.2% | 43.4% |
| 4026240 | 328.6.1.2 ↗ | a+b two layers › IF3-like › EPT/RTPC-like › EPT/RTPC-like › RTC | 0.51 | 42.0 | 3.22e-01 | 92.2% | 65.5% |
| 4024456 | 101.1.2.663 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF7602 | 0.51 | 37.0 | 3.98e-01 | 85.3% | 86.7% |
| 4335320 | 2003.1.5.8 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Ubie_methyltran | 0.51 | 36.0 | 2.78e-01 | 73.5% | 97.1% |
| 3838046 | 109.4.1.109 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sel1 | 0.51 | 38.0 | 3.21e-01 | 78.4% | 81.7% |
| 3793391 | 304.28.1.30 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › SCVP | 0.51 | 33.0 | 3.23e-01 | 97.1% | 59.1% |
| 5053109 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.50 | 36.0 | 3.30e-01 | 76.5% | 80.0% |
| 4016857 | 109.4.1.109 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sel1 | 0.50 | 43.0 | 3.58e-01 | 96.1% | 94.6% |
D2
high
residues 117-159
Domain cluster:
representative
CATH (59)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ykhA00 | 6.10.140.200 | Special › Helix non-globular › Helix Hairpins › | 0.87 | 73.0 | 5.62e-01 | 100.0% | 43.2% |
| 2qtfA02 | 6.10.250.2860 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.81 | 67.0 | 6.49e-01 | 100.0% | 83.0% |
| 2qf9A01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.77 | 61.0 | 4.18e-01 | 100.0% | 25.0% |
| 7eptR01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.77 | 64.0 | 3.92e-01 | 100.0% | 15.7% |
| 2jdiH02 | 1.20.5.440 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › ATP synthase delta/epsilon subunit, C-terminal domain | 0.77 | 62.0 | 6.34e-01 | 100.0% | 92.9% |
| 2lw1A00 | 1.10.287.380 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain | 0.76 | 67.0 | 5.36e-01 | 100.0% | 50.6% |
| 1tjlA00 | 1.20.120.910 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain | 0.76 | 68.0 | 4.64e-01 | 100.0% | 34.5% |
| 7dukB01 | 1.10.287.610 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.76 | 66.0 | 6.53e-01 | 100.0% | 93.5% |
| 2a26B01 | 4.10.860.10 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain | 0.75 | 62.0 | 6.19e-01 | 100.0% | 90.9% |
| 1lrzA03 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.75 | 57.0 | 5.09e-01 | 100.0% | 58.1% |
| 5mmjb02 | 1.10.287.610 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.75 | 66.0 | 6.21e-01 | 100.0% | 82.7% |
| 3behB01 | 1.20.120.540 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels | 0.74 | 60.0 | 4.42e-01 | 100.0% | 34.2% |
| 1ij5A01 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.73 | 57.0 | 4.72e-01 | 100.0% | 48.7% |
| 1o5hA00 | 1.20.120.680 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Formiminotetrahydrofolate cyclodeaminase monomer, up-and-down helical bundle | 0.73 | 63.0 | 4.06e-01 | 100.0% | 38.5% |
| 3m0fB02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.72 | 63.0 | 4.53e-01 | 100.0% | 38.2% |
| 3na7A00 | 1.10.287.1490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.72 | 58.0 | 3.63e-01 | 100.0% | 16.9% |
| 4mk3A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.71 | 61.0 | 4.51e-01 | 100.0% | 40.9% |
| 4abmD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.71 | 60.0 | 4.96e-01 | 100.0% | 53.2% |
| 2qe9B01 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.71 | 60.0 | 4.10e-01 | 97.7% | 56.3% |
| 1lvfB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.71 | 60.0 | 4.58e-01 | 100.0% | 42.3% |
| 4id0A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.71 | 62.0 | 4.55e-01 | 100.0% | 42.0% |
| 4gltA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.68 | 59.0 | 4.38e-01 | 100.0% | 40.4% |
| 4u2vA02 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.68 | 44.0 | 3.57e-01 | 72.1% | 33.8% |
| 3okqA00 | 1.20.58.1540 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Actin interacting protein 3, C-terminal domain | 0.68 | 57.0 | 4.12e-01 | 100.0% | 33.6% |
| 1xqrA00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.67 | 55.0 | 3.42e-01 | 97.7% | 19.1% |
| 4aflA00 | 6.10.140.1740 | Special › Helix non-globular › Helix Hairpins › | 0.67 | 57.0 | 4.36e-01 | 100.0% | 41.2% |
| 2r9iA00 | 1.10.287.80 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain | 0.67 | 58.0 | 4.96e-01 | 100.0% | 74.6% |
| 6cgaC02 | 1.20.58.860 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.66 | 56.0 | 4.69e-01 | 100.0% | 64.1% |
| 6yz2A01 | 1.20.120.350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C | 0.65 | 50.0 | 3.73e-01 | 100.0% | 31.7% |
| 1br0A00 | 1.20.58.70 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.65 | 56.0 | 4.09e-01 | 100.0% | 70.8% |
| 1u7lA02 | 1.20.1460.10 | Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 | 0.63 | 51.0 | 3.48e-01 | 100.0% | 90.2% |
| 2q12A00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.63 | 51.0 | 3.27e-01 | 100.0% | 17.8% |
| 1hs7A00 | 1.20.58.70 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.63 | 54.0 | 4.19e-01 | 100.0% | 61.9% |
| 1vf7A03 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.63 | 51.0 | 4.74e-01 | 100.0% | 73.3% |
| 2zgyA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.62 | 53.0 | 3.76e-01 | 100.0% | 45.7% |
| 2ikbC00 | 1.20.141.10 | Mainly Alpha › Up-down Bundle › Chitosanase, subunit A; domain 1 › Chitosanase, subunit A, domain 1 | 0.61 | 49.0 | 3.29e-01 | 88.4% | 28.0% |
| 4hwdD00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.61 | 53.0 | 4.21e-01 | 100.0% | 71.1% |
| 4e6nA02 | 6.10.140.1010 | Special › Helix non-globular › Helix Hairpins › | 0.61 | 49.0 | 4.45e-01 | 100.0% | 66.7% |
| 4dwlA00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.61 | 50.0 | 3.79e-01 | 97.7% | 37.0% |
| 2e5yA02 | 1.20.5.440 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › ATP synthase delta/epsilon subunit, C-terminal domain | 0.61 | 51.0 | 5.06e-01 | 100.0% | 93.3% |
| 2kwhA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.60 | 49.0 | 4.64e-01 | 97.7% | 91.1% |
| 4qpkB02 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.60 | 50.0 | 3.61e-01 | 100.0% | 59.0% |
| 3mgdB00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.60 | 41.0 | 2.77e-01 | 72.1% | 78.9% |
| 3fhnA01 | 6.10.280.210 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dsl1p vesicle tethering complex, Tip20p subunit, domain A | 0.60 | 51.0 | 3.41e-01 | 100.0% | 23.9% |
| 3gzfD00 | 1.10.150.420 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Coronavirus nonstructural protein 4 C-terminus | 0.59 | 49.0 | 3.85e-01 | 100.0% | 44.0% |
| 4ew6A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.58 | 37.0 | 2.81e-01 | 100.0% | 22.5% |
| 3fkjA02 | 1.10.10.2240 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.58 | 40.0 | 3.49e-01 | 100.0% | 48.4% |
| 5ffdA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.57 | 47.0 | 3.43e-01 | 100.0% | 31.4% |
| 4hwhE00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.57 | 47.0 | 3.86e-01 | 100.0% | 50.0% |
| 1wncB00 | 1.20.5.300 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.56 | 49.0 | 4.02e-01 | 100.0% | 100.0% |
| 4w4kA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.56 | 46.0 | 3.85e-01 | 100.0% | 53.7% |
| 3lyuA01 | 3.40.50.80 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module | 0.56 | 46.0 | 3.38e-01 | 93.0% | 34.8% |
| 2uv8A07 | 6.10.140.1410 | Special › Helix non-globular › Helix Hairpins › | 0.55 | 48.0 | 3.82e-01 | 97.7% | 72.9% |
| 5gj7A01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.54 | 42.0 | 3.25e-01 | 100.0% | 34.4% |
| 4okvE00 | 6.10.140.1890 | Special › Helix non-globular › Helix Hairpins › | 0.54 | 45.0 | 3.91e-01 | 90.7% | 61.5% |
| 3fxdB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.54 | 41.0 | 3.94e-01 | 100.0% | 77.6% |
| 4griA04 | 1.10.8.70 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 | 0.54 | 37.0 | 3.54e-01 | 74.4% | 66.0% |
| 1ni3A03 | 1.10.150.300 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Obg-related GTPase Ych/YyaF, coiled-coil domain | 0.53 | 40.0 | 3.44e-01 | 100.0% | 48.4% |
| 1wjzA00 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.52 | 40.0 | 3.37e-01 | 100.0% | 47.9% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4318541 | 4006.1.1.1 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF | 0.85 | 72.0 | 5.30e-01 | 100.0% | 38.1% |
| 3415935 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.83 | 76.0 | 7.47e-01 | 100.0% | 95.6% |
| 3619575 | 192.5.1.1 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › HR1 | 0.81 | 68.0 | 5.52e-01 | 100.0% | 50.0% |
| 3897625 | 3755.4.1.71 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › WWC1 | 0.80 | 66.0 | 4.58e-01 | 100.0% | 28.9% |
| 3462885 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.79 | 70.0 | 4.54e-01 | 100.0% | 23.2% |
| 3982421 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.79 | 64.0 | 5.32e-01 | 100.0% | 52.0% |
| 4249161 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.78 | 65.0 | 5.71e-01 | 100.0% | 61.5% |
| 4338737 | 192.6.1.0 ↗ | alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain | 0.78 | 65.0 | 6.42e-01 | 100.0% | 88.9% |
| 3234298 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.77 | 69.0 | 6.34e-01 | 100.0% | 78.2% |
| 4169218 | 192.3.1.0 ↗ | alpha bundles › Long alpha-hairpin › Fe,Mn superoxide dismutase (SOD), N-terminal domain › Fe,Mn superoxide dismutase (SOD), N-terminal domain | 0.77 | 70.0 | 5.47e-01 | 100.0% | 50.6% |
| 5002349 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.76 | 62.0 | 5.47e-01 | 100.0% | 61.5% |
| 3969538 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.76 | 62.0 | 5.77e-01 | 100.0% | 72.7% |
| 5055919 | 159.1.1.4 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › Hypothetical protein AF_0060 › PRA-PH | 0.75 | 56.0 | 4.48e-01 | 100.0% | 40.0% |
| 3968484 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.74 | 60.0 | 5.17e-01 | 100.0% | 57.1% |
| 5047588 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.74 | 60.0 | 5.61e-01 | 100.0% | 72.7% |
| 5038847 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.73 | 62.0 | 5.27e-01 | 100.0% | 58.6% |
| 4647937 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.73 | 63.0 | 5.71e-01 | 100.0% | 71.7% |
| 54352 | 133.2.1.0 ↗ | alpha bundles › DH domain-like › Methenyltetrahydrofolate cyclohydrolase-like › Methenyltetrahydrofolate cyclohydrolase-like | 0.73 | 63.0 | 4.08e-01 | 100.0% | 38.9% |
| 3600894 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.73 | 64.0 | 4.04e-01 | 100.0% | 20.5% |
| 138422 | 109.1.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C | 0.72 | 63.0 | 4.51e-01 | 100.0% | 37.3% |
| 4963655 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.72 | 62.0 | 4.22e-01 | 100.0% | 27.7% |
| 2409294 | 601.52.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Flagellar hook-associated protein 1 helical domain › Flagellar hook-associated protein 1 helical domain › Flagellin_N | 0.72 | 58.0 | 4.14e-01 | 100.0% | 29.6% |
| 4857875 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.71 | 61.0 | 4.94e-01 | 100.0% | 54.8% |
| 3714222 | 109.4.1.759 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Dymeclin | 0.69 | 61.0 | 3.35e-01 | 100.0% | 12.0% |
| 3713670 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.69 | 49.0 | 4.11e-01 | 100.0% | 42.5% |
| 3844040 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.68 | 57.0 | 5.09e-01 | 100.0% | 66.2% |
| 3796175 | 192.15.1.99 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › PF31025 | 0.68 | 56.0 | 5.35e-01 | 100.0% | 81.1% |
| 4877500 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.67 | 53.0 | 4.22e-01 | 100.0% | 40.8% |
| 3250375 | 192.1.1.0 ↗ | alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain | 0.66 | 56.0 | 4.77e-01 | 100.0% | 57.3% |
| 4815139 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.66 | 56.0 | 4.20e-01 | 100.0% | 37.4% |
| 3199608 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.66 | 56.0 | 4.25e-01 | 100.0% | 48.2% |
| 3464475 | 4207.1.1.0 ↗ | alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › RNA polymerase II holoenzyme component SRB7 (MED21) | 0.63 | 55.0 | 3.67e-01 | 100.0% | 25.9% |
| 3774397 | 150.5.1.67 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › NEDD4_Bsd2 | 0.63 | 55.0 | 4.30e-01 | 100.0% | 49.5% |
| 3629641 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.61 | 50.0 | 3.19e-01 | 100.0% | 17.6% |
| 3595800 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.59 | 51.0 | 3.23e-01 | 100.0% | 21.3% |
| 3402853 | 192.6.1.0 ↗ | alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain | 0.59 | 52.0 | 4.94e-01 | 100.0% | 94.0% |
| 3380583 | 7516.1.1.47 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Cellulose_synt | 0.58 | 50.0 | 2.77e-01 | 100.0% | 13.6% |
| 3512473 | 170.1.1.11 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C › DUF1759 | 0.58 | 45.0 | 3.48e-01 | 100.0% | 39.2% |
| 3531576 | 192.13.1.0 ↗ | alpha bundles › Long alpha-hairpin › ISY1 N-terminal domain-like › ISY1 N-terminal domain-like | 0.57 | 45.0 | 4.04e-01 | 100.0% | 62.9% |
| 4022194 | 3092.1.1.1 ↗ | alpha arrays › yeast protein YOR252W › yeast protein YOR252W › yeast protein YOR252W › Tma16 | 0.55 | 48.0 | 3.22e-01 | 97.7% | 63.6% |
| 4176828 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.52 | 40.0 | 3.66e-01 | 100.0% | 61.4% |