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KC751414.1__AGK87029.1__RIO-1_15__00015

Bact-Vir

KC751414.1__AGK87029.1__RIO-1_15__00015

Identity

Accession:
KC751414 ↗
Kingdom:
phage

Quality

90.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Zobellviridae› Melvirus› Pseudoalteromonas_phage_RIO-1

TaxID: 1316739

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 8-55
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.88 81.0 7.16e-01 100.0% 92.4%
1gcqB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.86 78.0 7.38e-01 100.0% 98.2%
2rqtA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.85 76.0 7.06e-01 100.0% 98.4%
1udlA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.85 77.0 6.01e-01 100.0% 57.1%
1ov3A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.85 75.0 7.21e-01 97.9% 100.0%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.85 77.0 6.93e-01 100.0% 95.3%
3nmzD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.84 76.0 6.21e-01 100.0% 66.7%
6uzjA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.84 74.0 6.80e-01 100.0% 92.1%
3pe0A03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.84 76.0 6.84e-01 100.0% 79.7%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.84 75.0 6.98e-01 100.0% 98.3%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.83 75.0 6.39e-01 100.0% 78.7%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.83 74.0 6.57e-01 100.0% 82.4%
2kymA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.83 73.0 5.87e-01 100.0% 63.4%
6vlfA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.83 73.0 6.83e-01 97.9% 98.3%
2eczA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.83 73.0 6.44e-01 100.0% 82.9%
2pqhB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.82 73.0 6.59e-01 100.0% 86.2%
2ekhA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.82 73.0 6.07e-01 97.9% 68.8%
2epdA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.82 72.0 6.22e-01 100.0% 73.7%
2fpeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.82 73.0 6.74e-01 100.0% 93.5%
6uy8A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.82 71.0 6.64e-01 97.9% 93.2%
5o99A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.81 72.0 6.71e-01 100.0% 93.3%
1wfwA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.81 72.0 6.22e-01 100.0% 83.8%
2ckkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.81 72.0 6.97e-01 100.0% 98.1%
2ke9A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.80 70.0 6.23e-01 97.9% 92.5%
6bioA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.79 64.0 6.07e-01 89.6% 100.0%
1y0mA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.79 70.0 6.50e-01 100.0% 93.4%
7k9cA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.78 69.0 5.70e-01 100.0% 60.5%
1s1nA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.78 67.0 6.29e-01 100.0% 95.0%
2egeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.78 67.0 5.84e-01 100.0% 85.3%
1ng2A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.77 52.0 5.45e-01 70.8% 90.9%
4epcA02 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.76 64.0 5.67e-01 95.8% 93.0%
2bzyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.75 56.0 5.19e-01 81.2% 66.1%
1t0hA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.74 58.0 4.70e-01 89.6% 65.6%
2dk3A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.74 63.0 5.29e-01 100.0% 70.9%
2m9uA00 2.30.30.850 Mainly Beta › Roll › SH3 type barrels. › 0.72 64.0 5.22e-01 100.0% 55.1%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 64.0 5.60e-01 97.9% 74.3%
3mp6A05 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 62.0 5.67e-01 100.0% 79.4%
2kdsA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 59.0 4.92e-01 100.0% 59.3%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.68 57.0 5.63e-01 97.9% 100.0%
4cshA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.68 58.0 4.06e-01 100.0% 35.4%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.66 54.0 5.14e-01 100.0% 76.7%
2hvfA00 3.40.5.10 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › Ribosomal protein L9, N-terminal domain 0.62 46.0 4.58e-01 100.0% 76.9%
4v19I01 3.40.5.10 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › Ribosomal protein L9, N-terminal domain 0.62 46.0 4.42e-01 100.0% 70.2%
1irxA02 2.30.30.300 Mainly Beta › Roll › SH3 type barrels. › class i lysyl-tRNA synthetase like 0.61 48.0 4.99e-01 91.7% 97.7%
4c0fC00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.61 52.0 4.01e-01 97.9% 50.9%
1ei5A03 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.52 40.0 3.30e-01 89.6% 89.2%
ECOD (87)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3575263 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.88 80.0 7.13e-01 97.9% 84.6%
3919980 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.88 80.0 7.18e-01 100.0% 86.2%
3563539 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.88 80.0 6.98e-01 100.0% 80.0%
3747208 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.88 78.0 6.49e-01 97.9% 68.8%
3561013 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.87 79.0 6.75e-01 100.0% 74.7%
3217113 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.87 75.0 6.73e-01 93.8% 81.5%
3933965 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.87 78.0 7.27e-01 97.9% 94.8%
3267416 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.87 79.0 6.55e-01 100.0% 70.0%
3338134 4.1.1.155 ↗ beta barrels › SH3 › SH3 › SH3 › CRR42-like 0.86 79.0 6.71e-01 100.0% 86.7%
3888222 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.86 78.0 6.83e-01 100.0% 80.0%
3475881 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.86 78.0 6.83e-01 100.0% 75.7%
4610859 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.86 78.0 7.03e-01 100.0% 86.2%
3876823 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.86 77.0 6.54e-01 97.9% 73.3%
3399284 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.86 78.0 7.03e-01 100.0% 86.2%
3554162 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.86 78.0 7.02e-01 100.0% 89.2%
4367301 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.86 77.0 7.40e-01 100.0% 90.9%
3216017 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.86 78.0 6.23e-01 100.0% 72.2%
3899829 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.86 77.0 6.60e-01 100.0% 74.7%
3535437 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.86 78.0 7.22e-01 100.0% 93.3%
3899851 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.86 75.0 6.73e-01 95.8% 83.1%
3737825 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.85 73.0 6.99e-01 93.8% 96.4%
3573775 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.85 77.0 6.90e-01 100.0% 86.2%
3748846 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.85 77.0 6.90e-01 100.0% 86.2%
4483819 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.85 77.0 6.75e-01 100.0% 80.0%
3259033 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.85 78.0 7.17e-01 100.0% 95.0%
3542245 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.85 78.0 6.76e-01 100.0% 80.0%
3269589 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.85 77.0 6.71e-01 100.0% 80.0%
3516244 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.85 77.0 6.40e-01 100.0% 70.0%
4104114 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.85 77.0 6.89e-01 100.0% 84.6%
3526953 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.85 76.0 6.95e-01 100.0% 93.7%
3910605 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.85 76.0 6.38e-01 100.0% 77.5%
3755099 604.1.1.97 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › SH3_1 0.85 76.0 6.22e-01 100.0% 65.9%
4171510 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.84 76.0 6.35e-01 100.0% 72.5%
3885696 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.84 77.0 6.87e-01 100.0% 86.2%
3523584 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.84 76.0 6.48e-01 100.0% 80.0%
4133335 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.84 76.0 7.02e-01 100.0% 91.7%
3872095 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.84 72.0 6.91e-01 93.8% 96.4%
3554994 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.84 76.0 6.10e-01 100.0% 65.2%
3254502 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.84 76.0 5.97e-01 100.0% 66.3%
3906249 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.84 75.0 6.45e-01 100.0% 74.7%
142250 4.1.1.99 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_10 0.84 76.0 6.80e-01 100.0% 78.5%
3543889 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.84 75.0 4.30e-01 100.0% 13.6%
3625909 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.84 74.0 6.21e-01 97.9% 68.8%
3269758 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.84 75.0 6.30e-01 100.0% 70.0%
3234274 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.84 74.0 6.46e-01 97.9% 81.4%
3585447 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.84 74.0 6.24e-01 100.0% 70.0%
3569639 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.83 75.0 6.27e-01 100.0% 73.8%
3398702 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.83 75.0 6.91e-01 100.0% 93.3%
165657 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.82 73.0 6.46e-01 97.9% 82.1%
1263753 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.82 72.0 6.73e-01 100.0% 96.7%
4163789 4.1.1.7 ↗ beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 0.81 74.0 5.61e-01 100.0% 62.9%
2636173 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.81 71.0 6.47e-01 100.0% 86.2%
3881192 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 72.0 4.87e-01 100.0% 32.9%
3558774 4.1.1.104 ↗ beta barrels › SH3 › SH3 › SH3 › KN17_SH3 0.81 71.0 6.59e-01 97.9% 85.0%
4473115 4.1.1.5 ↗ beta barrels › SH3 › SH3 › SH3 › KOW,Ribosomal_L14e 0.81 74.0 5.71e-01 100.0% 48.0%
3993882 4.1.1.103 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_12 0.80 53.0 5.26e-01 70.8% 66.0%
25699 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.80 71.0 6.78e-01 100.0% 100.0%
3482225 4.1.1.300 ↗ beta barrels › SH3 › SH3 › SH3 › KN17_SH3, SH3_KIN17_C 0.79 70.0 5.06e-01 100.0% 82.3%
2137275 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.79 70.0 6.51e-01 97.9% 91.5%
3277206 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 71.0 5.96e-01 100.0% 70.5%
4964768 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 67.0 6.23e-01 100.0% 90.0%
3636896 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 68.0 5.81e-01 100.0% 77.3%
4874232 4.1.1.29 ↗ beta barrels › SH3 › SH3 › SH3 › PSI_PsaE 0.76 67.0 5.96e-01 100.0% 92.8%
3924149 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 66.0 6.56e-01 100.0% 94.0%
3925408 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 66.0 6.58e-01 97.9% 94.0%
3517651 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 66.0 5.70e-01 100.0% 74.7%
3516333 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 67.0 6.40e-01 100.0% 85.5%
3502388 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 65.0 5.57e-01 97.9% 64.0%
3854638 4.1.1.131 ↗ beta barrels › SH3 › SH3 › SH3 › MLVIN_C 0.73 65.0 5.10e-01 100.0% 49.0%
3927663 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 64.0 5.85e-01 100.0% 73.8%
3236689 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 63.0 6.05e-01 95.8% 85.5%
3411714 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 66.0 5.76e-01 100.0% 71.4%
3464886 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.72 65.0 6.02e-01 100.0% 88.3%
3862537 4.1.1.131 ↗ beta barrels › SH3 › SH3 › SH3 › MLVIN_C 0.72 61.0 6.06e-01 93.8% 92.0%
3926017 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 64.0 6.14e-01 100.0% 90.9%
3936726 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 61.0 5.89e-01 95.8% 89.1%
3504834 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 62.0 5.84e-01 97.9% 84.5%
4119693 6064.1.1.0 ↗ few secondary structure elements › EAGR box containing domain in MG200 › EAGR box containing domain in MG200 › EAGR box containing domain in MG200 0.69 51.0 5.14e-01 100.0% 81.6%
3929784 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 58.0 5.82e-01 97.9% 100.0%
3638396 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.68 58.0 5.49e-01 100.0% 91.7%
4139778 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.66 54.0 4.89e-01 100.0% 71.2%
4068345 4.1.2.2 ↗ beta barrels › SH3 › SH3 › Stringent starvation protein B, SspB › MJ1316 0.65 55.0 4.75e-01 100.0% 77.5%
3941320 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.63 53.0 4.71e-01 100.0% 70.7%
5002755 375.1.1.299 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › CPxCG_zf 0.62 47.0 4.80e-01 93.8% 93.3%
3505725 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 49.0 4.80e-01 100.0% 92.7%
4927385 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.60 48.0 4.81e-01 95.8% 94.0%
3587629 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 48.0 4.51e-01 100.0% 89.2%