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KC751414.1__AGK87069.1__RIO-1_55__00055

Bact-Vir

KC751414.1__AGK87069.1__RIO-1_55__00055

Identity

Accession:
KC751414 ↗
Kingdom:
phage

Quality

54.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Zobellviridae› Melvirus› Pseudoalteromonas_phage_RIO-1

TaxID: 1316739

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 86-159
PDB
Domain cluster: rep: MF034659.1__ARV77571.1__X__00007__D301-386
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3a1pB00 3.30.860.10 Alpha Beta › 2-Layer Sandwich › 30s Ribosomal Protein S19; Chain A › Ribosomal protein S19/S15 0.57 37.0 3.56e-01 93.2% 56.5%
2o95B00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.56 46.0 3.52e-01 100.0% 38.6%
2eo6A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.53 42.0 3.70e-01 91.9% 59.3%
2w5aA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 39.0 4.20e-01 83.8% 93.8%
2ar1A00 3.10.590.10 Alpha Beta › Roll › ph1033 like fold › ph1033 like domains 0.52 44.0 3.45e-01 93.2% 65.0%
2azpA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.52 41.0 3.28e-01 97.3% 41.0%
5dnoA00 3.10.590.10 Alpha Beta › Roll › ph1033 like fold › ph1033 like domains 0.52 44.0 3.51e-01 100.0% 59.1%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2512672 3856.1.2.1 ↗ beta sandwiches › Putative tailspike protein Orf210 N-terminal domain › Putative tailspike protein Orf210 N-terminal domain › tailspike protein Orf211 N-terminal domain › Phage_tail_beta 0.80 69.0 7.23e-01 90.5% 100.0%
2409669 207.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.79 63.0 3.89e-01 90.5% 16.5%
3251055 3856.1.2.1 ↗ beta sandwiches › Putative tailspike protein Orf210 N-terminal domain › Putative tailspike protein Orf210 N-terminal domain › tailspike protein Orf211 N-terminal domain › Phage_tail_beta 0.77 66.0 6.82e-01 94.6% 97.1%
4859120 3856.1.2.0 ↗ beta sandwiches › Putative tailspike protein Orf210 N-terminal domain › Putative tailspike protein Orf210 N-terminal domain › tailspike protein Orf211 N-terminal domain 0.77 66.0 5.93e-01 94.6% 69.4%
4393394 3856.1.2.1 ↗ beta sandwiches › Putative tailspike protein Orf210 N-terminal domain › Putative tailspike protein Orf210 N-terminal domain › tailspike protein Orf211 N-terminal domain › Phage_tail_beta 0.77 62.0 6.55e-01 89.2% 96.9%
2491347 3856.1.2.1 ↗ beta sandwiches › Putative tailspike protein Orf210 N-terminal domain › Putative tailspike protein Orf210 N-terminal domain › tailspike protein Orf211 N-terminal domain › Phage_tail_beta 0.76 64.0 6.06e-01 90.5% 76.1%
3164979 3856.1.2.1 ↗ beta sandwiches › Putative tailspike protein Orf210 N-terminal domain › Putative tailspike protein Orf210 N-terminal domain › tailspike protein Orf211 N-terminal domain › Phage_tail_beta 0.74 69.0 6.39e-01 100.0% 84.4%
4044111 3856.1.2.0 ↗ beta sandwiches › Putative tailspike protein Orf210 N-terminal domain › Putative tailspike protein Orf210 N-terminal domain › tailspike protein Orf211 N-terminal domain 0.74 61.0 6.28e-01 89.2% 95.7%
3286703 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.61 47.0 4.00e-01 86.5% 90.8%
4362630 389.1.1.5 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › Plasmod_Pvs28 0.57 32.0 3.73e-01 90.5% 80.0%
3239884 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.57 42.0 3.77e-01 98.6% 56.2%
3849532 2007.1.2.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.53 46.0 3.40e-01 100.0% 63.8%
3170688 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.52 31.0 3.43e-01 74.3% 75.0%
4377781 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.51 36.0 3.56e-01 91.9% 70.0%
5030407 1.1.7.22 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Peptidase_M42 0.50 42.0 3.93e-01 90.5% 81.1%
3498558 4.18.1.1 ↗ beta barrels › SH3 › Plus3 › Plus3 › Plus-3 0.50 40.0 3.31e-01 91.9% 46.0%
D2 medium residues 316-375
PDB
D3 medium residues 376-540
PDB
D4 medium residues 541-612
PDB
D5 medium residues 613-673
PDB