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KC787111.1__AGK86391.1__Sedge_0032__00033
Bact-VirKC787111.1__AGK86391.1__Sedge_0032__00033
Identity
- Accession:
- KC787111 ↗
- Kingdom:
- phage
Quality
72.4
mean pLDDT
Taxonomy
TaxID: 1327953
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-62
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4hehA01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.72 | 54.0 | 4.65e-01 | 81.1% | 67.5% |
| 5m43A00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.61 | 45.0 | 3.28e-01 | 83.0% | 75.0% |
| 7eqeB01 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.58 | 43.0 | 3.10e-01 | 81.1% | 88.8% |
| 2lefA00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.54 | 34.0 | 2.95e-01 | 98.1% | 38.4% |
| 3rh2A00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.54 | 48.0 | 3.20e-01 | 100.0% | 57.4% |
| 3bhgA01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.53 | 36.0 | 2.81e-01 | 71.7% | 67.0% |
| 1ztdA00 | 1.10.1520.20 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III | 0.51 | 43.0 | 3.28e-01 | 94.3% | 82.4% |
| 5jbdA03 | 3.20.20.470 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glucansucrase | 0.51 | 42.0 | 2.57e-01 | 100.0% | 63.0% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4388053 | 138.1.1.5 ↗ | alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA_pol3_gamma3 | 0.68 | 49.0 | 3.77e-01 | 77.4% | 32.8% |
| 3388667 | 101.1.2.477 ↗ | alpha arrays › HTH › HTH › winged helix domain › MADF_DNA_bdg | 0.65 | 47.0 | 3.98e-01 | 84.9% | 44.2% |
| 3487419 | 109.4.1.25 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DIL | 0.61 | 46.0 | 2.73e-01 | 86.8% | 49.4% |
| 3357775 | 101.1.2.396 ↗ | alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 | 0.57 | 43.0 | 3.68e-01 | 84.9% | 81.1% |
| 3499057 | 304.137.1.0 ↗ | a+b two layers › Alpha-beta plaits › NOL1/NOP2/sun N-terminal ferredoxin-like domain › NOL1/NOP2/sun N-terminal ferredoxin-like domain | 0.55 | 46.0 | 3.17e-01 | 96.2% | 69.2% |
| 3323743 | 101.1.2.401 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_GTF3C1_N | 0.54 | 39.0 | 3.29e-01 | 77.4% | 100.0% |
| 3291425 | 191.1.1.44 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_43 | 0.53 | 38.0 | 2.95e-01 | 75.5% | 60.0% |
| 4291293 | 2488.1.1.3 ↗ | a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › tRNA_m1G_MT | 0.53 | 45.0 | 2.96e-01 | 100.0% | 35.2% |
| 3788571 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 44.0 | 2.71e-01 | 100.0% | 65.1% |
| 2779092 | 864.1.1.2 ↗ | a+b two layers › DLC › DLC › DLC › Tctex-1 | 0.51 | 40.0 | 3.16e-01 | 86.8% | 68.4% |
| 4871985 | 275.1.1.12 ↗ | a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › RNA_pol_Rpb1_7, RNA_pol_Rpb1_5 | 0.51 | 40.0 | 4.08e-01 | 100.0% | 92.0% |