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KC801932.2__AGJ71516.1__Lw1_gp108__00108
Bact-VirKC801932.2__AGJ71516.1__Lw1_gp108__00108
Identity
- Accession:
- KC801932 ↗
- Kingdom:
- phage
Quality
75.0
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Straboviridae›
Pseudotevenvirus›
Escherichia_phage_Lw1
TaxID: 1307804
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-153
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1v58A01 | 3.10.450.70 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Disulphide bond isomerase, DsbC/G, N-terminal | 0.71 | 30.0 | 4.14e-01 | 89.8% | 78.9% |
| 2hc5A01 | 3.30.160.170 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › FlaG-like | 0.65 | 30.0 | 3.67e-01 | 71.4% | 65.3% |
| 4exrA02 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.61 | 31.0 | 4.24e-01 | 74.1% | 100.0% |
| 4exrA01 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.60 | 31.0 | 4.04e-01 | 72.8% | 88.9% |
| 3kyiA00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.59 | 31.0 | 3.31e-01 | 93.9% | 55.5% |
| 4eqaC00 | 2.40.128.650 | Mainly Beta › Beta Barrel › Lipocalin › | 0.58 | 36.0 | 3.60e-01 | 83.7% | 60.0% |
| 3wyfE00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.55 | 34.0 | 3.47e-01 | 86.4% | 62.7% |
| 2kieA00 | 2.30.29.110 | Mainly Beta › Roll › PH-domain like › | 0.54 | 35.0 | 3.81e-01 | 85.7% | 76.6% |
| 2xzhA00 | 2.130.10.110 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Clathrin heavy-chain terminal domain | 0.53 | 39.0 | 2.98e-01 | 75.5% | 96.9% |
| 1ksiA01 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 31.0 | 3.71e-01 | 70.1% | 90.6% |
| 4omfA00 | 1.10.645.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome-c3 Hydrogenase; chain B › Cytochrome-c3 Hydrogenase, chain B | 0.51 | 37.0 | 2.74e-01 | 74.8% | 62.6% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5832 | 4292.1.1.1 ↗ | a+b two layers › FlaG-like › FlaG-related › FlaG-related › FlaG | 0.65 | 30.0 | 3.51e-01 | 71.4% | 58.7% |
| 4957228 | 71.1.1.0 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB | 0.63 | 32.0 | 3.42e-01 | 89.8% | 53.8% |
| 3965259 | 243.3.1.16 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY_2 | 0.63 | 33.0 | 4.38e-01 | 73.5% | 98.6% |
| 4973793 | 243.5.1.0 ↗ | a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region | 0.62 | 33.0 | 4.16e-01 | 71.4% | 84.4% |
| 4029286 | 616.1.1.1 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › Ribosomal_S15 | 0.57 | 34.0 | 3.62e-01 | 71.4% | 66.2% |
| 3958846 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.56 | 51.0 | 3.85e-01 | 100.0% | 95.2% |
| 2145749 | 330.19.1.1 ↗ | a+b two layers › dsRBD-like › Anti-CRISPR protein Acr30-35/AcrF1 › Anti-CRISPR protein Acr30-35/AcrF1 › Acr30-35_AcrF1 | 0.55 | 30.0 | 3.89e-01 | 70.7% | 96.2% |
| None | — | 0.55 | 40.0 | 2.85e-01 | 92.5% | 24.0% | |
| 3306315 | 109.4.1.189 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2 | 0.54 | 34.0 | 4.18e-01 | 91.2% | 100.0% |
| 6427 | 243.5.1.1 ↗ | a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region › Cu_amine_oxidN2 | 0.53 | 31.0 | 3.79e-01 | 70.7% | 89.5% |
| 3876697 | 5.1.5.110 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_FAM234A_B | 0.52 | 39.0 | 2.78e-01 | 92.5% | 24.2% |
| 3630542 | 109.4.1.264 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RMD1-3 | 0.51 | 37.0 | 4.17e-01 | 87.1% | 100.0% |
| 3324772 | 243.5.1.1 ↗ | a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region › Cu_amine_oxidN2 | 0.50 | 31.0 | 3.72e-01 | 70.1% | 93.7% |
| 3199490 | 5.1.4.369 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › EMC1_C, Beta-prop_EMC1_N | 0.50 | 41.0 | 2.62e-01 | 89.1% | 95.3% |