←Back to structures

KC821607.1__AGO47294.1__Phi19-1_gp004__00004

Bact-Vir

KC821607.1__AGO47294.1__Phi19-1_gp004__00004

Identity

Accession:
KC821607 ↗
Kingdom:
phage

Quality

71.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Assiduviridae› Cellubavirus› Cellulophaga_phage_phi19:1

TaxID: 1327970

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 29-80
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u3eM02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 52.0 4.80e-01 80.8% 79.4%
2jveA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.67 48.0 4.33e-01 76.9% 60.6%
4bwsF00 3.30.1490.40 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain 0.66 48.0 4.46e-01 78.8% 65.7%
1a0iA01 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.65 56.0 4.83e-01 100.0% 67.5%
1m0wB05 3.30.1490.50 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Glutathione synthase lid domain 0.63 53.0 5.16e-01 100.0% 96.7%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.63 51.0 4.88e-01 98.1% 90.9%
4qglA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.63 44.0 3.06e-01 75.0% 75.9%
1wgrA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.63 53.0 4.66e-01 100.0% 96.3%
3tcaA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.61 51.0 4.42e-01 100.0% 88.9%
2cs4A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.61 52.0 4.34e-01 100.0% 80.0%
2ed8A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 48.0 4.23e-01 94.2% 75.6%
3a5vA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.60 51.0 4.24e-01 100.0% 92.9%
3cc1A02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.59 52.0 4.41e-01 100.0% 80.7%
4avrA00 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.59 51.0 4.26e-01 100.0% 98.9%
3pvlA02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.59 48.0 4.03e-01 96.2% 93.8%
2wcyA01 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.59 39.0 3.63e-01 76.9% 49.3%
1ktbA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.59 49.0 4.20e-01 100.0% 83.5%
2f4eB00 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.59 51.0 3.90e-01 100.0% 86.6%
3klqA01 2.60.40.3050 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 48.0 3.71e-01 92.3% 49.6%
5eo9A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 47.0 3.82e-01 94.2% 81.3%
5eo9B01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 49.0 3.95e-01 100.0% 76.4%
4dipH00 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.58 50.0 3.89e-01 100.0% 88.2%
1zc1A01 2.40.40.50 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › Ubiquitin fusion degradation protein UFD1, N-terminal domain 0.58 48.0 3.98e-01 100.0% 92.2%
2xy1A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 47.0 3.90e-01 94.2% 82.5%
1aw8B00 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.57 49.0 4.11e-01 98.1% 69.2%
3au4A02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.57 45.0 3.86e-01 94.2% 92.6%
5x6vF00 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.57 44.0 3.37e-01 84.6% 66.9%
2uwqA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.57 46.0 4.10e-01 100.0% 89.5%
1f94A00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.56 41.0 3.89e-01 78.8% 65.1%
6kghA02 3.30.450.330 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.56 43.0 3.09e-01 84.6% 62.3%
3ue3A02 3.30.450.330 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.55 43.0 3.13e-01 84.6% 63.4%
2iv2X04 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.54 48.0 3.90e-01 100.0% 98.0%
6jkvA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.54 45.0 3.05e-01 100.0% 75.2%
1a8mA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.54 44.0 3.31e-01 98.1% 81.6%
1x4rA01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.54 39.0 3.59e-01 86.5% 93.7%
3zo9B03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.54 45.0 3.83e-01 100.0% 97.9%
4r7rA00 3.30.1490.410 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Uncharacterised protein PF16224, DUF4883 0.54 45.0 3.48e-01 96.2% 52.5%
3r7wC02 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.53 43.0 3.42e-01 90.4% 70.1%
3eehA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 36.0 2.94e-01 75.0% 45.7%
2pk0A00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.53 43.0 2.90e-01 100.0% 76.1%
2d8bA01 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.52 38.0 2.98e-01 84.6% 63.6%
3onhA01 3.10.290.20 Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › Ubiquitin-like 2 activating enzyme e1b. Chain: B, domain 3 0.52 45.0 3.59e-01 100.0% 66.7%
3jr7A02 2.20.28.50 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › DegV, N-terminal domain, peripheral subdomain 0.52 34.0 3.62e-01 76.9% 94.7%
4dmiA02 2.60.120.1010 Mainly Beta › Sandwich › Jelly Rolls › 0.51 41.0 3.25e-01 100.0% 70.1%
3k3dA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 37.0 2.86e-01 78.8% 77.0%
2gnrA01 6.10.30.10 Special › Helix non-globular › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › 0.51 39.0 3.69e-01 98.1% 68.1%
5fr6A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.51 40.0 3.61e-01 96.2% 86.7%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3385376 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.64 54.0 4.11e-01 96.2% 57.6%
3176986 221.1.1.6 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.63 53.0 4.63e-01 100.0% 84.7%
3935405 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.62 53.0 4.52e-01 100.0% 91.1%
3777239 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 51.0 3.98e-01 94.2% 60.0%
4794127 221.1.1.76 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.61 51.0 4.21e-01 100.0% 74.3%
4953482 284.1.1.1 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like › FKBP_C 0.61 48.0 3.70e-01 88.5% 75.2%
3935404 221.1.1.76 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.61 51.0 4.40e-01 100.0% 95.6%
3575366 221.1.1.76 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.61 51.0 4.32e-01 100.0% 86.3%
3849943 221.1.1.76 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.61 51.0 3.83e-01 100.0% 91.0%
3586126 221.1.1.76 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.61 50.0 3.95e-01 100.0% 64.8%
4340143 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.61 43.0 3.99e-01 76.9% 63.8%
5058275 284.1.1.1 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like › FKBP_C 0.61 48.0 3.60e-01 88.5% 73.3%
3437270 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.60 48.0 4.50e-01 96.2% 94.3%
3388528 7056.1.1.0 ↗ few secondary structure elements › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan 0.60 42.0 4.69e-01 75.0% 97.5%
3991455 822.2.1.1 ↗ a+b two layers › GYF/BRK domain-like › BRK domain-like › BRK domain-like › BRK 0.60 49.0 4.89e-01 98.1% 98.2%
3475306 221.1.1.76 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.60 50.0 4.05e-01 100.0% 72.7%
3531085 221.1.1.6 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.60 48.0 4.07e-01 96.2% 93.7%
3395603 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.60 49.0 3.97e-01 98.1% 96.4%
3763238 12.1.1.32 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Melibiase_2_C 0.59 49.0 4.05e-01 100.0% 72.4%
3876105 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.59 48.0 4.07e-01 96.2% 93.7%
3916476 221.1.1.73 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RASSF8-10_RA 0.59 47.0 4.17e-01 96.2% 92.9%
4021338 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.59 50.0 4.15e-01 100.0% 94.0%
3798349 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.59 49.0 4.29e-01 100.0% 96.5%
4599214 221.1.1.73 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RASSF8-10_RA 0.58 47.0 3.95e-01 100.0% 91.4%
6172 221.1.1.73 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RASSF8-10_RA 0.58 47.0 4.13e-01 96.2% 92.9%
3736912 223.2.1.10 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA 0.58 45.0 3.32e-01 84.6% 70.0%
3533173 221.1.1.6 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.57 46.0 4.14e-01 96.2% 97.5%
3216926 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 50.0 3.63e-01 100.0% 63.3%
4945022 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 47.0 3.76e-01 90.4% 82.0%
164929 221.1.1.74 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ASPP2-like_RA 0.57 46.0 4.10e-01 100.0% 89.5%
3715519 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 43.0 2.86e-01 84.6% 39.5%
3932124 5050.1.1.32 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Acatn 0.56 45.0 3.00e-01 96.2% 70.4%
4406921 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.56 48.0 4.01e-01 94.2% 91.8%
4008034 223.1.1.113 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PF30408 0.55 41.0 2.84e-01 78.8% 42.4%
3919304 221.1.1.6 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.55 43.0 3.70e-01 96.2% 83.0%
3289280 223.1.1.42 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › Rv3651-like_C 0.55 43.0 3.31e-01 84.6% 91.7%
3940759 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.55 44.0 3.88e-01 100.0% 87.8%
3483645 221.1.1.6 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.54 43.0 3.94e-01 100.0% 96.2%
3497076 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.54 43.0 3.74e-01 94.2% 92.2%
3535768 221.1.1.6 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.54 42.0 3.62e-01 96.2% 85.0%
3714622 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 42.0 3.20e-01 84.6% 59.2%
5046055 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.54 41.0 3.17e-01 82.7% 88.3%
3601417 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.54 38.0 3.72e-01 92.3% 66.7%
5034549 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.54 37.0 2.92e-01 75.0% 79.2%
3164579 322.1.1.1 ↗ a+b two layers › HPr-like › HPr-like › HPr-like › PTS-HPr 0.54 43.0 3.63e-01 100.0% 58.1%
3993535 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.54 42.0 3.84e-01 96.2% 97.5%
4000746 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.54 42.0 3.51e-01 84.6% 92.1%
3503544 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.54 42.0 3.50e-01 96.2% 94.5%
4382604 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.54 46.0 3.66e-01 96.2% 70.5%
3600944 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.53 43.0 3.44e-01 96.2% 70.6%
5050910 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 41.0 3.14e-01 84.6% 68.7%
3977310 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 36.0 2.88e-01 75.0% 40.0%
2042120 223.1.1.12 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_2 0.52 43.0 3.27e-01 90.4% 79.8%
3391860 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 42.0 3.44e-01 90.4% 86.0%
4525796 3351.1.1.1 ↗ a/b three-layered sandwiches › Atg7 N-terminal domain-like › N-terminal domain in E1 enzyme Atg7 › N-terminal domain in E1 enzyme Atg7 › ATG7_N 0.52 35.0 2.72e-01 75.0% 26.4%
3801584 221.1.1.6 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.52 42.0 3.58e-01 100.0% 84.0%
3993281 221.1.1.55 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RAWUL 0.52 42.0 3.35e-01 98.1% 87.5%
3282470 223.1.1.42 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › Rv3651-like_C 0.51 41.0 3.29e-01 90.4% 95.5%
3738248 221.1.1.6 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.51 40.0 3.68e-01 94.2% 92.0%
4466783 223.1.1.82 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_12 0.51 35.0 2.61e-01 75.0% 31.5%
3407846 221.1.1.76 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.51 40.0 3.49e-01 100.0% 89.0%
3405854 221.7.1.3 ↗ a+b two layers › beta-Grasp › E2-binding domain of E1 › E2-binding domain of E1 › UAE_UbL 0.51 44.0 3.62e-01 100.0% 73.0%
3217007 221.7.1.3 ↗ a+b two layers › beta-Grasp › E2-binding domain of E1 › E2-binding domain of E1 › UAE_UbL 0.51 40.0 3.52e-01 100.0% 70.5%
3494401 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.51 45.0 3.69e-01 100.0% 66.3%
4163015 314.1.1.2 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b 0.50 40.0 2.45e-01 96.2% 15.5%
3631387 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 38.0 3.48e-01 84.6% 77.1%