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KC821607.1__AGO47336.1__Phi19-1_gp046__00046
Bact-VirKC821607.1__AGO47336.1__Phi19-1_gp046__00046
Identity
- Accession:
- KC821607 ↗
- Kingdom:
- phage
Quality
95.6
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Assiduviridae›
Cellubavirus›
Cellulophaga_phage_phi19:1
TaxID: 1327970
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-51
Domain cluster:
representative
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2rklF00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.87 | 60.0 | 5.88e-01 | 75.5% | 67.3% |
| 2rhcA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.86 | 62.0 | 3.78e-01 | 85.7% | 14.4% |
| 1j30A00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.84 | 60.0 | 4.23e-01 | 75.5% | 56.7% |
| 4me2A00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.84 | 62.0 | 4.07e-01 | 100.0% | 20.1% |
| 3u4tB00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.82 | 63.0 | 3.88e-01 | 81.6% | 30.0% |
| 3gffA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.82 | 61.0 | 3.64e-01 | 79.6% | 81.0% |
| 4u1cA01 | 4.10.860.10 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain | 0.81 | 55.0 | 5.45e-01 | 75.5% | 67.3% |
| 2do9A01 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.80 | 64.0 | 5.32e-01 | 87.8% | 95.2% |
| 1kaeA03 | 1.20.5.1300 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.80 | 57.0 | 5.50e-01 | 75.5% | 90.9% |
| 2y4tB01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.78 | 58.0 | 3.46e-01 | 85.7% | 11.7% |
| 2ondA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.76 | 60.0 | 3.62e-01 | 89.8% | 13.6% |
| 2mpcA00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.76 | 68.0 | 5.54e-01 | 100.0% | 96.7% |
| 1nfvA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.76 | 67.0 | 4.44e-01 | 93.9% | 69.2% |
| 4hhxA00 | 1.20.81.30 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › Type II secretion system (T2SS), domain F | 0.76 | 66.0 | 5.20e-01 | 100.0% | 51.0% |
| 3rjvA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.75 | 54.0 | 3.85e-01 | 89.8% | 26.4% |
| 2kc7A00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.75 | 59.0 | 4.63e-01 | 85.7% | 42.4% |
| 3rd8A03 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.74 | 57.0 | 5.50e-01 | 100.0% | 74.1% |
| 2katA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.74 | 67.0 | 4.94e-01 | 98.0% | 63.5% |
| 2x3mA00 | 1.25.40.670 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.73 | 59.0 | 4.16e-01 | 100.0% | 27.7% |
| 1tjoB00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.72 | 66.0 | 4.42e-01 | 100.0% | 45.7% |
| 3kwoA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.72 | 61.0 | 4.28e-01 | 93.9% | 84.6% |
| 4g09A03 | 1.20.5.1300 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.72 | 53.0 | 5.09e-01 | 89.8% | 69.1% |
| 4gpkF02 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.72 | 62.0 | 3.88e-01 | 93.9% | 20.4% |
| 2chpA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.72 | 66.0 | 4.58e-01 | 100.0% | 55.4% |
| 3gw4A00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.71 | 64.0 | 4.19e-01 | 98.0% | 41.7% |
| 8fnyA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.71 | 60.0 | 3.92e-01 | 93.9% | 26.2% |
| 1e5rB02 | 1.10.1720.10 | Mainly Alpha › Orthogonal Bundle › Proline Oxidase; Chain: A, Domain 2 › L-proline 3-hydroxylase, C-terminal domain | 0.71 | 60.0 | 5.15e-01 | 100.0% | 58.3% |
| 5jjxA01 | 1.25.40.1040 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.70 | 61.0 | 3.75e-01 | 100.0% | 39.1% |
| 1s3qG00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.70 | 60.0 | 4.08e-01 | 93.9% | 72.4% |
| 3t9jA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.70 | 63.0 | 4.46e-01 | 100.0% | 57.6% |
| 4yvoA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.70 | 59.0 | 4.40e-01 | 93.9% | 40.3% |
| 7ewfA01 | 1.25.40.990 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.69 | 59.0 | 3.69e-01 | 93.9% | 19.3% |
| 2qqyA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.69 | 64.0 | 4.51e-01 | 100.0% | 52.9% |
| 2kilA00 | 3.90.1520.10 | Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain | 0.68 | 61.0 | 4.09e-01 | 100.0% | 68.0% |
| 4nrhB00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.68 | 59.0 | 3.97e-01 | 95.9% | 48.2% |
| 5z4zC00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 48.0 | 4.01e-01 | 89.8% | 45.5% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4386662 | 3291.1.1.158 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Seryl_tRNA_N | 0.88 | 60.0 | 4.41e-01 | 75.5% | 30.4% |
| 3442117 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.85 | 73.0 | 4.39e-01 | 95.9% | 15.4% |
| 4458484 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.83 | 65.0 | 4.53e-01 | 81.6% | 46.7% |
| 5001368 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.82 | 63.0 | 4.26e-01 | 89.8% | 25.0% |
| 3400887 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.81 | 61.0 | 3.67e-01 | 89.8% | 13.2% |
| 3926537 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.81 | 66.0 | 4.13e-01 | 87.8% | 18.8% |
| 3780281 | 109.4.1.1809 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_2, TPR_8, TPR_19 | 0.81 | 61.0 | 4.01e-01 | 87.8% | 20.7% |
| 5075267 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.80 | 66.0 | 5.94e-01 | 87.8% | 72.3% |
| 3448742 | 109.7.1.4 ↗ | alpha superhelices › Repetitive alpha hairpins › Cytochrome c oxidase subunit E › Cytochrome c oxidase subunit E › SNAP | 0.80 | 67.0 | 5.85e-01 | 89.8% | 78.6% |
| 5049087 | 1045.1.1.0 ↗ | alpha bundles › Rad50-binding domain of Mre11 › Rad50-binding domain of Mre11 › Rad50-binding domain of Mre11 | 0.79 | 58.0 | 6.06e-01 | 77.6% | 95.6% |
| 5045256 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.79 | 67.0 | 5.20e-01 | 89.8% | 74.7% |
| 4366824 | 589.1.2.1 ↗ | alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › TF C-terminus (Pfam 05698) › Trigger_C | 0.78 | 50.0 | 3.33e-01 | 79.6% | 18.3% |
| 3684054 | 109.4.1.1269 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, E_motif | 0.78 | 65.0 | 3.98e-01 | 89.8% | 17.0% |
| 3401010 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.77 | 64.0 | 4.84e-01 | 91.8% | 40.0% |
| 3669280 | 109.4.1.1258 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2 | 0.77 | 64.0 | 4.11e-01 | 93.9% | 21.5% |
| 3663346 | 109.4.1.1258 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2 | 0.75 | 62.0 | 3.77e-01 | 93.9% | 14.4% |
| 4978391 | 186.1.1.1 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 | 0.75 | 68.0 | 5.34e-01 | 100.0% | 49.0% |
| 3334592 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.75 | 63.0 | 4.47e-01 | 93.9% | 32.1% |
| 4965788 | 150.1.1.1 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Ferritin | 0.74 | 65.0 | 4.55e-01 | 93.9% | 89.3% |
| 4012726 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.74 | 66.0 | 4.77e-01 | 95.9% | 93.6% |
| 3520557 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.74 | 64.0 | 3.69e-01 | 98.0% | 10.8% |
| 169780 | 109.4.1.210 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_19 | 0.74 | 67.0 | 5.05e-01 | 98.0% | 68.2% |
| 3473214 | 150.1.1.1 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Ferritin | 0.73 | 63.0 | 4.19e-01 | 93.9% | 68.9% |
| 3816082 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.73 | 58.0 | 3.78e-01 | 87.8% | 21.0% |
| 4942810 | 5060.2.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF | 0.72 | 64.0 | 4.60e-01 | 100.0% | 52.1% |
| 3277866 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.72 | 60.0 | 3.54e-01 | 91.8% | 12.3% |
| 3411345 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.72 | 56.0 | 4.32e-01 | 83.7% | 41.9% |
| 5056690 | 5060.2.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF | 0.72 | 64.0 | 4.72e-01 | 100.0% | 58.4% |
| 4469597 | 192.17.1.11 ↗ | alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like › UVR | 0.72 | 65.0 | 6.21e-01 | 100.0% | 87.3% |
| 3325790 | 109.4.1.1524 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_ZFYVE26 | 0.71 | 62.0 | 3.52e-01 | 93.9% | 11.8% |
| 4185864 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.71 | 56.0 | 3.80e-01 | 85.7% | 24.6% |
| 3808847 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.71 | 61.0 | 4.20e-01 | 95.9% | 28.5% |
| 3255881 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.70 | 60.0 | 4.22e-01 | 100.0% | 31.9% |
| 3400194 | 558.1.1.0 ↗ | alpha duplicates or obligate multimers › Lis-homology dimerization domain › Lis-homology dimerization domain › Lis-homology dimerization domain | 0.69 | 56.0 | 3.32e-01 | 91.8% | 11.8% |