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KC821611.1__AGO47852.1__Phi46-1_gp41__00041

Bact-Vir

KC821611.1__AGO47852.1__Phi46-1_gp41__00041

Identity

Accession:
KC821611 ↗
Kingdom:
phage

Quality

82.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Cellulophaga_phage_phi46:1

TaxID: 1327974

Cluster

View cluster (14 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 25-131
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF18909.6 best dGTP_diPhyd_N 63.6 2.00e-17 100.0% 71.7%
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2wmmA01 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.79 25.0 3.90e-01 100.0% 67.3%
1xl3C00 1.20.1280.80 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.60 39.0 4.24e-01 96.3% 78.0%
2vycA03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.55 41.0 3.43e-01 78.5% 63.7%
2looA02 1.10.10.1740 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Transmembrane protein 14-like 0.54 36.0 4.13e-01 96.3% 96.0%
5c8aA01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.54 35.0 3.93e-01 90.7% 88.5%
2ds2D01 1.10.110.10 Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins 0.53 29.0 3.70e-01 84.1% 100.0%
2qgnA02 1.10.287.890 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 0.52 30.0 3.37e-01 91.6% 74.4%
2w4sA00 1.10.10.1440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PHAX RNA-binding domain 0.51 26.0 2.93e-01 84.1% 60.5%
4w8oB00 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.51 39.0 2.66e-01 81.3% 49.8%
2vf8B02 1.20.1580.10 Mainly Alpha › Up-down Bundle › ABC transporter ATPase like fold › ABC transporter ATPase like domain 0.51 44.0 3.87e-01 96.3% 82.4%
1qdbA02 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.50 39.0 3.48e-01 98.1% 60.1%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4995709 159.1.1.0 ↗ alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › Hypothetical protein AF_0060 0.73 55.0 5.92e-01 95.3% 92.2%
4083492 192.4.1.1 ↗ alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › Ribosomal_L29 0.71 43.0 5.43e-01 91.6% 100.0%
3699313 6155.1.1.4 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MPC 0.70 47.0 5.10e-01 94.4% 81.1%
4312756 192.4.1.1 ↗ alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › Ribosomal_L29 0.70 45.0 5.36e-01 95.3% 93.3%
3818483 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.67 52.0 3.60e-01 80.4% 64.2%
4616546 6155.1.1.4 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MPC 0.67 45.0 4.54e-01 93.5% 68.6%
3598135 6155.1.1.0 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter 0.67 44.0 4.93e-01 92.5% 84.7%
3735759 109.4.1.1856 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_TBCD_2nd 0.62 44.0 2.76e-01 74.8% 32.4%
3169981 109.4.1.3103 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_EZ, HEAT_GCN1_fung, HEAT_EF3_GNC1, HEAT_EF3_N, PF26715 0.61 44.0 2.53e-01 75.7% 13.0%
3250868 904.1.1.1 ↗ few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box 0.59 22.0 2.49e-01 86.9% 43.5%
3689410 109.4.1.1856 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_TBCD_2nd 0.57 43.0 3.07e-01 80.4% 77.6%
4030200 109.4.1.3075 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IBN_N, Xpo1, CRM1_C, CRM1_repeat_2, CRM1_repeat_3 0.56 44.0 2.53e-01 85.0% 22.0%
4657866 101.1.2.27 ↗ alpha arrays › HTH › HTH › winged helix domain › LexA_DNA_bind 0.55 27.0 3.15e-01 91.6% 63.7%
3188597 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.53 39.0 4.22e-01 94.4% 92.2%
4258578 604.14.1.1 ↗ alpha bundles › Spectrin repeat-like › PPK N-terminal domain-like › PPK N-terminal domain-like › PP_kinase_N 0.53 44.0 4.45e-01 95.3% 90.5%
3365690 109.4.1.927 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_LIN 0.52 45.0 3.44e-01 93.5% 44.2%
3966774 101.11.1.0 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 0.52 37.0 4.18e-01 100.0% 98.8%
3543893 604.1.1.1 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.51 42.0 4.09e-01 94.4% 80.0%
4091685 7014.1.1.1 ↗ alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › BacA 0.51 36.0 3.58e-01 72.9% 78.0%
5039845 186.1.1.0 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.50 32.0 3.18e-01 93.5% 59.1%
D2 medium residues 137-188
PDB