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KC821618.1__AGO48379.1__Phi10-1_gp038__00038

Bact-Vir

KC821618.1__AGO48379.1__Phi10-1_gp038__00038

Identity

Accession:
KC821618 ↗
Kingdom:
phage

Quality

81.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 54-91
PDB
Domain cluster: representative
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4gvbA00 3.30.70.440 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Killer toxin KP6 alpha-subunit 0.75 62.0 5.11e-01 100.0% 81.8%
2hpuA02 3.30.70.2050 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.72 59.0 5.10e-01 94.7% 65.1%
1ln0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.69 55.0 4.35e-01 100.0% 64.1%
3h7lA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.68 58.0 4.43e-01 100.0% 58.1%
2x9zA02 2.60.40.1140 Mainly Beta › Sandwich › Immunoglobulin-like › Collagen-binding surface protein Cna, B-type domain 0.67 56.0 4.10e-01 100.0% 38.1%
4gi3C00 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.67 52.0 4.71e-01 100.0% 61.4%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.66 55.0 3.67e-01 100.0% 44.9%
3gv4A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.66 53.0 4.03e-01 100.0% 37.4%
1gmuA01 3.30.70.790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain 0.65 52.0 4.54e-01 100.0% 85.1%
3tzyA02 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.64 53.0 4.49e-01 100.0% 91.4%
4j3vA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 51.0 3.93e-01 100.0% 41.0%
5amhA00 2.170.150.20 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › Peptide methionine sulfoxide reductase. 0.64 53.0 3.90e-01 97.4% 100.0%
7ahbB01 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.63 49.0 4.37e-01 92.1% 100.0%
1jceA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.63 52.0 3.56e-01 100.0% 46.4%
2cs4A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.62 49.0 3.90e-01 100.0% 42.1%
3au4A02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.62 51.0 3.96e-01 100.0% 50.0%
3fysA01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.62 48.0 3.32e-01 100.0% 23.5%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.62 46.0 4.21e-01 100.0% 66.7%
1ywlA00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.62 45.0 3.53e-01 84.2% 79.2%
3eqvA02 3.30.450.330 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.62 44.0 3.19e-01 84.2% 45.1%
5o60c00 2.20.28.120 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › Ribosomal protein L33 0.62 48.0 4.56e-01 92.1% 93.9%
3fo8D02 2.40.10.380 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.62 51.0 3.98e-01 100.0% 67.0%
3eipA00 3.10.50.20 Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein 0.61 49.0 4.01e-01 100.0% 88.1%
1zc3B00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 45.0 3.34e-01 81.6% 29.4%
4mz0B05 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.60 48.0 4.19e-01 100.0% 94.0%
7xc2A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 43.0 3.28e-01 84.2% 57.5%
3ju8A01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.59 45.0 2.73e-01 81.6% 54.3%
3g7sA01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.59 46.0 2.67e-01 92.1% 18.9%
3lrrA00 2.170.150.30 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › RIG-I-like receptor, C-terminal regulatory domain 0.59 49.0 3.54e-01 100.0% 78.5%
2oolA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.58 50.0 3.64e-01 100.0% 82.2%
3tj8A02 3.30.70.790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain 0.57 41.0 3.71e-01 100.0% 79.7%
1jqgA01 3.30.70.340 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Metallocarboxypeptidase-like 0.57 41.0 3.50e-01 100.0% 70.3%
3dadA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.57 39.0 2.36e-01 73.7% 19.4%
5x6vG00 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.57 48.0 3.34e-01 100.0% 64.4%
4kq7A02 2.60.120.1390 Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF2961 0.57 44.0 2.91e-01 100.0% 38.4%
2ww8A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 45.0 3.45e-01 100.0% 38.7%
5x6vF00 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.57 49.0 3.50e-01 100.0% 61.9%
1xa3A02 3.30.1540.10 Alpha Beta › 2-Layer Sandwich › formyl-coa transferase, domain 3 › formyl-coa transferase, domain 3 0.57 45.0 3.45e-01 94.7% 80.6%
3a21A02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.56 43.0 3.52e-01 100.0% 41.8%
1pzxA02 2.20.28.50 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › DegV, N-terminal domain, peripheral subdomain 0.56 41.0 4.14e-01 100.0% 100.0%
2qyxB01 3.30.70.1360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › mj0159-like 0.55 41.0 3.24e-01 100.0% 61.5%
3r7wB02 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.55 46.0 3.28e-01 100.0% 62.7%
3r7wC02 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.55 47.0 3.45e-01 100.0% 64.5%
2qbyB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 42.0 3.25e-01 89.5% 57.1%
2l6oA01 2.40.10.320 Mainly Beta › Beta Barrel › Thrombin, subunit H › Uncharacterised protein PF13642 yp_926445, N-terminal domain 0.53 37.0 3.43e-01 100.0% 58.3%
2kswA01 3.30.1490.260 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.53 38.0 3.81e-01 97.4% 93.5%
2l48A00 3.30.70.2030 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 37.0 3.21e-01 94.7% 78.8%
4q0jA03 3.30.450.270 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain 0.52 35.0 2.59e-01 81.6% 96.5%
2l1aA00 3.10.20.530 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.51 41.0 3.14e-01 97.4% 76.6%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4186857 4012.1.1.0 a+b two layers › SSHS domain › SSHS domain in type II DNA topoisomerase › SSHS domain in type II DNA topoisomerase 0.80 68.0 6.80e-01 100.0% 97.5%
3510118 4076.1.1.0 a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like 0.79 71.0 6.23e-01 100.0% 78.2%
3484879 4076.1.1.0 a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like 0.79 71.0 6.43e-01 100.0% 78.0%
3932124 5050.1.1.32 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Acatn 0.78 63.0 3.86e-01 100.0% 14.8%
3224294 5050.1.1.32 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Acatn 0.77 62.0 3.45e-01 100.0% 7.3%
3237753 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.76 54.0 4.44e-01 84.2% 41.4%
3584610 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.73 63.0 4.22e-01 100.0% 29.3%
4214122 10.12.1.1 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.73 63.0 4.16e-01 100.0% 26.2%
3400735 379.1.1.3 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 0.72 58.0 5.30e-01 100.0% 67.3%
3397134 379.1.1.0 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.71 57.0 5.31e-01 100.0% 72.0%
3839138 2004.1.1.36 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Dynamin_N 0.69 56.0 3.46e-01 100.0% 15.4%
3388590 379.1.1.0 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.69 57.0 5.05e-01 100.0% 65.0%
3338287 221.1.1.166 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PF26130 0.67 56.0 4.79e-01 100.0% 61.5%
4929510 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.66 49.0 4.69e-01 92.1% 98.0%
3935405 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.66 52.0 4.17e-01 100.0% 46.7%
5057458 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.65 54.0 3.42e-01 100.0% 18.6%
5078772 304.24.1.0 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.65 52.0 4.55e-01 100.0% 96.9%
4981612 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.65 54.0 4.28e-01 100.0% 48.2%
4968130 11.1.1.1424 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7490 0.63 53.0 4.00e-01 100.0% 53.3%
3231713 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.63 51.0 4.05e-01 100.0% 42.2%
3590781 101.1.2.92 alpha arrays › HTH › HTH › winged helix domain › HTH_11 0.63 43.0 3.34e-01 73.7% 86.7%
4065108 284.3.1.1 a+b two layers › FKBP-like › Colicin E3 immunity protein › Colicin E3 immunity protein › Cloacin_immun 0.63 49.0 4.06e-01 100.0% 96.5%
3575366 221.1.1.76 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.63 50.0 3.98e-01 100.0% 44.2%
3990034 101.1.2.92 alpha arrays › HTH › HTH › winged helix domain › HTH_11 0.62 44.0 3.37e-01 76.3% 83.3%
4001498 904.1.1.0 few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain 0.62 50.0 4.76e-01 100.0% 76.0%
4977323 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 46.0 3.26e-01 81.6% 28.8%
3993535 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.62 48.0 3.99e-01 100.0% 46.3%
3738248 221.1.1.6 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.62 48.0 4.05e-01 97.4% 52.0%
5000843 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 44.0 3.26e-01 81.6% 36.5%
146929 3115.3.1.1 a+b two layers › GP2-like › P56 › P56 › UDG-inhib_P56 0.60 48.0 4.41e-01 100.0% 82.1%
3780458 223.2.1.51 a+b three layers › Profilin-like › profilin-like › profilin-like › Njmu-R1 0.60 42.0 3.04e-01 84.2% 42.0%
4011129 221.1.1.46 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › USP7_ICP0_bdg 0.60 46.0 3.65e-01 100.0% 47.6%
5046495 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.60 53.0 3.86e-01 100.0% 55.0%
4050326 304.22.1.1 a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain › UreE_C 0.59 43.0 3.76e-01 100.0% 80.0%
3603835 304.122.1.1 a+b two layers › Alpha-beta plaits › Nitrogen repressor-like proteins › Nitrogen repressor-like proteins › NRD1_2 0.59 42.0 3.18e-01 78.9% 36.2%
4197026 304.22.1.0 a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain 0.58 44.0 3.84e-01 100.0% 92.0%
432311 304.22.1.1 a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain › UreE_C 0.58 42.0 3.69e-01 100.0% 73.8%
5001137 821.1.1.4 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF123 0.58 44.0 3.20e-01 97.4% 92.1%
4931004 304.8.1.12 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_8 0.58 42.0 3.82e-01 94.7% 100.0%
3739494 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.57 42.0 3.60e-01 97.4% 86.3%
3794632 223.2.1.10 a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA 0.56 48.0 3.25e-01 100.0% 57.4%
3407363 223.2.1.10 a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA 0.56 48.0 3.25e-01 100.0% 55.9%
4977356 3253.1.1.0 a+b two layers › ferredoxin-like domain in flagellar biosynthesis protein flhA › ferredoxin-like domain in flagellar biosynthesis protein flhA › ferredoxin-like domain in flagellar biosynthesis protein flhA 0.56 42.0 3.94e-01 94.7% 100.0%
3739712 223.2.1.10 a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA 0.55 48.0 3.36e-01 100.0% 60.0%
4174001 304.22.1.1 a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain › UreE_C 0.55 40.0 3.72e-01 100.0% 89.2%
3714622 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 40.0 2.86e-01 78.9% 26.7%
3975174 3253.1.1.0 a+b two layers › ferredoxin-like domain in flagellar biosynthesis protein flhA › ferredoxin-like domain in flagellar biosynthesis protein flhA › ferredoxin-like domain in flagellar biosynthesis protein flhA 0.54 42.0 4.04e-01 100.0% 98.0%
5032187 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 41.0 3.81e-01 94.7% 94.5%
4382604 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.53 46.0 3.35e-01 100.0% 54.3%
144313 221.1.1.71 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ForC_N 0.51 41.0 3.16e-01 97.4% 81.0%
4406921 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.50 43.0 3.36e-01 100.0% 67.1%