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KC821618.1__AGO48397.1__Phi10-1_gp056__00056

Bact-Vir

KC821618.1__AGO48397.1__Phi10-1_gp056__00056

Identity

Accession:
KC821618 ↗
Kingdom:
phage

Quality

93.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Assiduviridae› Cebadecemvirus› Cellulophaga_phage_phi10:1

TaxID: 1327981

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-62
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2e6zA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.79 53.0 5.45e-01 100.0% 72.9%
3bm4A00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.62 40.0 2.74e-01 88.5% 20.3%
7cceA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.61 56.0 4.12e-01 100.0% 47.0%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 47.0 4.25e-01 100.0% 61.9%
2gs5A01 3.40.1740.10 Alpha Beta › 3-Layer(aba) Sandwich › VC0467-like › VC0467-like 0.58 50.0 3.61e-01 100.0% 67.6%
4ifdI02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 46.0 3.53e-01 91.8% 61.8%
6ruiC01 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.56 43.0 3.23e-01 86.9% 81.2%
1ixdA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.55 49.0 4.11e-01 100.0% 61.5%
7ylrA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 41.0 3.58e-01 88.5% 85.7%
4hikA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 41.0 3.28e-01 91.8% 67.4%
1lomA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.52 33.0 2.83e-01 100.0% 37.6%
4i8oA02 3.30.160.690 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Bacterial toxin RNase RnlA/LsoA, N repeated domain 0.51 36.0 3.22e-01 93.4% 50.0%
1ywmA01 2.60.500.10 Mainly Beta › Sandwich › Surface Active Protein fold › Surface Active Protein domain 0.50 40.0 3.44e-01 88.5% 77.6%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3217772 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 53.0 4.72e-01 100.0% 50.6%
3485638 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 43.0 3.31e-01 91.8% 30.0%
4995784 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 46.0 4.35e-01 100.0% 62.7%
3707345 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 57.0 4.97e-01 100.0% 87.8%
4611577 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.61 54.0 4.92e-01 96.7% 91.3%
3710893 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 52.0 3.98e-01 100.0% 49.2%
3685207 2.1.1.51 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EXOSC1 0.56 47.0 3.53e-01 91.8% 63.2%
4107506 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.56 36.0 3.60e-01 93.4% 63.1%
3523646 6.1.1.11 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Fascin 0.55 46.0 3.76e-01 100.0% 71.2%
3788453 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.55 48.0 3.10e-01 98.4% 36.5%
3911248 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.55 49.0 4.29e-01 100.0% 85.6%
3373621 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 45.0 4.12e-01 90.2% 72.5%
3625285 11.1.1.8 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Na_K-ATPase 0.54 45.0 3.00e-01 90.2% 72.5%
4002691 2484.1.1.74 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Tex_YqgF 0.54 42.0 3.13e-01 88.5% 54.9%
3945586 206.1.1.11 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.54 47.0 3.01e-01 98.4% 29.5%
4503473 206.1.1.98 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › RIO1, APH 0.54 47.0 3.11e-01 98.4% 37.3%
3306580 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 45.0 4.55e-01 95.1% 91.7%
1678591 705.1.1.1 ↗ beta duplicates or obligate multimers › Cyanovirin-N › Cyanovirin-N › Cyanovirin-N › CVNH 0.53 33.0 3.51e-01 98.4% 71.7%
4252610 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 43.0 3.82e-01 90.2% 93.3%
3935730 241.10.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › GAS2 domain › GAS2 domain › GAS2 0.52 40.0 3.49e-01 98.4% 55.6%
1178369 705.1.1.1 ↗ beta duplicates or obligate multimers › Cyanovirin-N › Cyanovirin-N › Cyanovirin-N › CVNH 0.52 32.0 3.49e-01 98.4% 77.6%
1178368 705.1.1.1 ↗ beta duplicates or obligate multimers › Cyanovirin-N › Cyanovirin-N › Cyanovirin-N › CVNH 0.52 33.0 3.46e-01 98.4% 73.6%
3338857 246.3.1.0 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like 0.52 41.0 3.00e-01 95.1% 30.9%
3445416 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.52 45.0 2.81e-01 100.0% 21.1%
3261473 212.1.1.0 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.51 37.0 3.25e-01 80.3% 50.5%
3648057 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.51 44.0 2.75e-01 100.0% 29.0%