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KC821618.1__AGO48398.1__Phi10-1_gp057__00057

Bact-Vir

KC821618.1__AGO48398.1__Phi10-1_gp057__00057

Identity

Accession:
KC821618 ↗
Kingdom:
phage

Quality

93.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Assiduviridae› Cebadecemvirus› Cellulophaga_phage_phi10:1

TaxID: 1327981

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-22_120-162
PDB
Domain cluster: representative
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2lfcA00 3.90.700.10 Alpha Beta › Alpha-Beta Complex › Flavocytochrome C3; Chain A, domain 1 › Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 0.71 60.0 4.44e-01 100.0% 88.1%
1ybyA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.71 40.0 3.89e-01 100.0% 48.4%
3l2pA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.69 56.0 5.27e-01 92.9% 81.7%
1fblA02 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.65 37.0 2.56e-01 100.0% 15.7%
5xnpA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 52.0 4.58e-01 94.6% 72.7%
4jvuA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 52.0 4.25e-01 98.2% 69.1%
1g5hB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.61 50.0 4.15e-01 96.4% 71.0%
1vq0A02 3.90.1280.10 Alpha Beta › Alpha-Beta Complex › CBS domain Like › HSP33 redox switch-like 0.60 42.0 4.25e-01 100.0% 73.7%
2xotA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 51.0 4.50e-01 98.2% 81.4%
1adjB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.60 49.0 4.26e-01 96.4% 74.5%
1httA02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.60 47.0 4.09e-01 94.6% 72.4%
1z1bA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.59 34.0 3.40e-01 89.3% 52.6%
1nj1A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.57 46.0 3.93e-01 96.4% 72.1%
1jbjA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 46.0 4.15e-01 100.0% 64.0%
4hkhA00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.57 44.0 3.40e-01 91.1% 98.0%
3sl7A00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.57 48.0 3.68e-01 100.0% 88.7%
3he1A00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.56 44.0 3.43e-01 92.9% 98.6%
4wi1A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.56 45.0 3.67e-01 96.4% 62.6%
2j3lA01 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.56 44.0 3.68e-01 94.6% 63.7%
3gbyA00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.55 46.0 3.68e-01 100.0% 90.6%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 38.0 3.23e-01 100.0% 41.7%
3besR01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 45.0 4.08e-01 100.0% 78.3%
4eeeA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 44.0 3.72e-01 100.0% 75.7%
2i4lB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.54 43.0 3.70e-01 94.6% 72.3%
5u3fA02 3.20.10.10 Alpha Beta › Alpha-Beta Barrel › D-amino Acid Aminotransferase; Chain A, domain 2 › D-amino Acid Aminotransferase, subunit A, domain 2 0.54 44.0 3.23e-01 100.0% 55.6%
3lkxB00 2.20.70.30 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › Nascent polypeptide-associated complex domain 0.53 39.0 4.02e-01 96.4% 81.5%
5ff5A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.52 39.0 2.60e-01 82.1% 57.7%
4m7xA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.52 43.0 3.77e-01 98.2% 60.4%
2nmlA00 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.51 39.0 3.47e-01 94.6% 91.0%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.51 30.0 3.13e-01 100.0% 58.8%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 32.0 3.40e-01 94.6% 68.1%
3h5nD02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 38.0 2.61e-01 87.5% 54.1%
2j6aA00 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.51 44.0 3.37e-01 100.0% 86.0%
4fw1A02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.50 34.0 3.52e-01 96.4% 74.1%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3288140 304.44.1.0 ↗ a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 0.69 56.0 4.39e-01 91.1% 85.0%
3745942 11.1.1.96 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set 0.62 54.0 4.31e-01 100.0% 67.0%
3786112 317.1.1.0 ↗ a+b two layers › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase 0.62 48.0 3.59e-01 91.1% 66.1%
2028019 4.1.1.136 ↗ beta barrels › SH3 › SH3 › SH3 › NMD_SH3 0.61 41.0 3.91e-01 100.0% 59.1%
5042827 242.2.1.0 ↗ a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like 0.60 40.0 4.02e-01 100.0% 69.1%
4579534 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.60 36.0 3.48e-01 100.0% 49.2%
4062573 7502.1.1.0 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.58 47.0 4.01e-01 94.6% 69.0%
5040416 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 33.0 3.46e-01 100.0% 62.0%
4223628 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.57 44.0 3.91e-01 94.6% 72.6%
4478971 4.1.1.174 ↗ beta barrels › SH3 › SH3 › SH3 › DUF951 0.56 36.0 3.46e-01 98.2% 55.4%
3255498 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 47.0 4.20e-01 98.2% 72.9%
4397259 7.1.1.0 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain 0.56 44.0 3.81e-01 96.4% 82.5%
5050109 375.1.1.31 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 0.56 37.0 3.26e-01 96.4% 44.7%
4952887 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 39.0 3.96e-01 78.6% 100.0%
3570399 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 37.0 3.58e-01 96.4% 63.1%
4012002 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 38.0 3.62e-01 78.6% 98.6%
4946165 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 38.0 3.83e-01 76.8% 96.4%
3914746 4.1.1.128 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_4 0.53 34.0 3.23e-01 100.0% 51.4%
4530301 7.1.1.10 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_6 0.53 44.0 4.03e-01 100.0% 91.3%
4171510 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.53 33.0 2.97e-01 94.6% 41.2%
4935681 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 37.0 3.80e-01 76.8% 96.4%
3633434 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.52 32.0 3.03e-01 94.6% 47.1%
3902975 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.52 33.0 3.25e-01 98.2% 58.3%
5058926 4.6.1.0 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.52 38.0 3.48e-01 96.4% 60.0%
3928962 4161.1.1.2 ↗ beta complex topology › MOSC N-terminal domain-like › MOSC N-terminal domain-like › MOSC N-terminal domain-like › MOSC_N 0.51 40.0 2.92e-01 94.6% 32.0%
4982334 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.50 35.0 3.61e-01 78.6% 98.2%
4089556 7575.1.1.6 ↗ a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like › Peptidase_C80 0.50 39.0 2.58e-01 92.9% 34.6%
3593065 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.50 34.0 2.86e-01 73.2% 51.3%
D2 high residues 25-116
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3u83A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 36.0 3.55e-01 70.7% 95.0%
2wngA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 35.0 3.37e-01 70.7% 94.4%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2725012 304.12.1.0 ↗ a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 0.54 39.0 3.28e-01 75.0% 80.5%
3716566 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.54 38.0 3.41e-01 75.0% 84.4%
5025945 304.165.1.0 ↗ a+b two layers › Alpha-beta plaits › Uncharacterized protein Ta1207 › Uncharacterized protein Ta1207 0.54 46.0 3.90e-01 95.7% 61.4%
4128067 242.1.1.5 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N 0.52 41.0 3.92e-01 87.0% 74.5%
3232755 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.51 37.0 3.91e-01 76.1% 100.0%