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KC821618.1AGO48403.1Phi10-1_gp062__00062

Bact-Vir

KC821618.1__AGO48403.1__Phi10-1_gp062__00062

Identity

Accession:: KC821618 ↗
Kingdom:: phage

Quality

79.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Assiduviridae› Cebadecemvirus› Cellulophaga_phage_phi10:1

TaxID: 1327981

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 33-74_121-234_364-393

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04860.18 best	Phage_portal	44.3	1.80e-11	83.9%	33.3%

CATH (10)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3kdrA02	3.40.140.120	Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 ›	0.78	48.0	5.85e-01	79.0%	91.3%
1ex4B02	2.30.30.10	Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral	0.66	23.0	4.06e-01	71.0%	98.3%
1fouA02	2.40.500.10	Mainly Beta › Beta Barrel › Upper collar protein gp10 (connector protein) fold › Upper collar protein gp10 (connector protein)	0.64	43.0	4.98e-01	84.9%	95.5%
2epdA00	2.30.30.40	Mainly Beta › Roll › SH3 type barrels. › SH3 Domains	0.56	22.0	3.43e-01	78.5%	89.5%
2ekhA00	2.30.30.40	Mainly Beta › Roll › SH3 type barrels. › SH3 Domains	0.56	21.0	3.05e-01	78.0%	73.8%
3qvnA02	3.55.40.20	Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain	0.54	33.0	3.97e-01	73.7%	94.0%
2ya0A01	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.54	26.0	3.01e-01	84.4%	61.7%
2fhdA02	2.30.30.810	Mainly Beta › Roll › SH3 type barrels. ›	0.54	23.0	3.47e-01	73.1%	98.6%
6uy8A01	2.30.30.40	Mainly Beta › Roll › SH3 type barrels. › SH3 Domains	0.53	20.0	3.21e-01	80.6%	100.0%
3p54A02	3.30.67.10	Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2	0.51	19.0	2.91e-01	83.3%	83.1%

ECOD (11)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3942943	4056.1.1.1 ↗	beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Phage_prot_Gp6	0.74	60.0	5.32e-01	83.9%	96.9%
4891117	4038.1.1.11 ↗	alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › SU10_portal	0.71	66.0	4.62e-01	100.0%	90.8%
4625344	152.1.2.0 ↗	alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RNA polymerase omega subunit	0.63	21.0	3.47e-01	78.5%	80.0%
5064457	4.7.1.0 ↗	beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29	0.63	21.0	3.33e-01	88.7%	75.7%
5057445	4.7.1.1 ↗	beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29	0.59	22.0	3.16e-01	90.9%	70.6%
5054738	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.58	20.0	3.42e-01	86.6%	96.4%
4947175	4.7.1.0 ↗	beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29	0.57	23.0	3.17e-01	91.4%	71.1%
5038850	4.7.1.1 ↗	beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29	0.57	22.0	3.07e-01	88.7%	68.9%
4977702	4.7.1.1 ↗	beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29	0.56	23.0	3.22e-01	90.3%	76.5%
3501513	391.1.1.0 ↗	few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module	0.55	20.0	2.79e-01	91.9%	62.6%
5049139	4.7.1.1 ↗	beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29	0.53	24.0	3.12e-01	90.9%	74.0%

D2 high residues 399-459

PDB

Domain cluster: representative

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2ia2A01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.61	36.0	3.45e-01	85.2%	52.9%
4x0qA04	1.10.150.20	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain	0.57	47.0	3.62e-01	93.4%	40.3%
4hy3A02	3.40.50.720	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain	0.53	36.0	2.64e-01	73.8%	96.7%
2jt1A00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.52	35.0	3.35e-01	70.5%	93.0%
4mloA03	1.10.10.60	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like	0.51	38.0	3.90e-01	82.0%	100.0%
2dt5B01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.51	37.0	3.53e-01	77.0%	87.7%
3snoA01	3.30.470.10	Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain	0.51	35.0	2.81e-01	70.5%	55.4%
3iuoA00	1.10.10.1390	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › ATP-dependent DNA helicase RecQ	0.51	40.0	3.36e-01	86.9%	55.0%

ECOD (14)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4987329	101.1.2.881 ↗	alpha arrays › HTH › HTH › winged helix domain › UPF0175	0.64	45.0	3.99e-01	70.5%	75.3%
5076135	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.61	51.0	5.18e-01	90.2%	96.7%
4654073	101.1.1.371 ↗	alpha arrays › HTH › HTH › Three-helical HTH › UPF0175	0.58	46.0	4.29e-01	85.2%	73.3%
5064868	101.1.11.203 ↗	alpha arrays › HTH › HTH › Ribbon-helix-helix › UPF0175	0.56	45.0	3.97e-01	86.9%	63.3%
3981026	101.1.1.58 ↗	alpha arrays › HTH › HTH › Three-helical HTH › HTH_18	0.56	41.0	3.52e-01	80.3%	81.9%
5028174	101.1.11.203 ↗	alpha arrays › HTH › HTH › Ribbon-helix-helix › UPF0175	0.55	39.0	4.09e-01	73.8%	81.8%
5045749	101.1.11.203 ↗	alpha arrays › HTH › HTH › Ribbon-helix-helix › UPF0175	0.55	43.0	4.25e-01	82.0%	81.5%
4930041	102.2.1.0 ↗	alpha arrays › HhH/H2TH › H2TH › H2TH	0.54	36.0	3.70e-01	70.5%	70.0%
3974068	101.1.1.58 ↗	alpha arrays › HTH › HTH › Three-helical HTH › HTH_18	0.54	40.0	3.90e-01	82.0%	84.1%
4541688	101.1.1.58 ↗	alpha arrays › HTH › HTH › Three-helical HTH › HTH_18	0.53	39.0	3.24e-01	80.3%	86.8%
5078267	101.1.2.881 ↗	alpha arrays › HTH › HTH › winged helix domain › UPF0175	0.52	43.0	3.99e-01	88.5%	74.7%
2323748	101.1.1.88 ↗	alpha arrays › HTH › HTH › Three-helical HTH › RecQ-1-like_HTH	0.51	40.0	4.02e-01	86.9%	93.4%
4590066	101.1.1.58 ↗	alpha arrays › HTH › HTH › Three-helical HTH › HTH_18	0.51	41.0	3.39e-01	90.2%	71.7%
5075696	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.50	37.0	3.49e-01	80.3%	69.3%

D3 medium residues 262-318

PDB

Domain cluster: representative

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3kdrA03	3.30.1120.70	Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain ›	0.65	48.0	5.04e-01	91.2%	96.0%
3aqoA01	3.30.70.3400	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.61	51.0	4.56e-01	93.0%	96.2%
4c3xB02	3.90.700.10	Alpha Beta › Alpha-Beta Complex › Flavocytochrome C3; Chain A, domain 1 › Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain	0.55	43.0	3.20e-01	84.2%	97.2%
3znuA00	3.30.70.1060	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel	0.50	43.0	3.63e-01	94.7%	79.8%
3g8qA02	3.30.70.1940	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.50	38.0	3.50e-01	87.7%	91.3%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3700554	267.1.1.0 ↗	a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain	0.68	50.0	3.99e-01	78.9%	92.2%
3437890	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.66	46.0	3.96e-01	71.9%	96.6%
3237290	4357.1.1.0 ↗	beta barrels › WWE domain › WWE domain › WWE domain	0.61	46.0	3.91e-01	82.5%	98.9%
5039294	4038.1.1.1 ↗	alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal	0.61	48.0	3.18e-01	100.0%	18.9%
4410228	4038.1.1.1 ↗	alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal	0.59	48.0	3.20e-01	98.2%	78.9%
4890334	5067.1.1.4 ↗	alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › MMPL	0.57	42.0	3.11e-01	80.7%	58.0%
4470927	304.9.1.1 ↗	a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1	0.57	45.0	3.58e-01	89.5%	73.6%
5043707	304.120.1.0 ↗	a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI	0.54	40.0	3.77e-01	80.7%	97.1%