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KC821618.1__AGO48423.1__Phi10-1_gp082__00082

Bact-Vir

KC821618.1__AGO48423.1__Phi10-1_gp082__00082

Identity

Accession:
KC821618 ↗
Kingdom:
phage

Quality

88.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Assiduviridae› Cebadecemvirus› Cellulophaga_phage_phi10:1

TaxID: 1327981

Cluster

View cluster (33 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-142
PDB
Domain cluster: rep: IMGVR_UViG_3300009121_000002-3300009121-Ga0118671_100022828__D14-173
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04883.18 best HK97-gp10_like 48.1 2.50e-12 54.2% 98.7%
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1dliA03 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.67 23.0 2.86e-01 81.7% 46.7%
1f02T00 4.10.820.10 Few Secondary Structures › Irregular › Translocated Intimin Receptor; Chain T › Translocated intimin receptor, central domain 0.64 32.0 4.39e-01 90.1% 100.0%
1hciA03 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 29.0 3.20e-01 88.0% 58.3%
4lp8A01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.56 36.0 4.12e-01 85.9% 88.5%
2fgyA01 1.20.120.1310 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Carboxysome Shell Carbonic Anhydrase, N-terminal helical domain 0.55 33.0 3.77e-01 88.7% 78.5%
8ek4A01 1.20.120.20 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein 0.54 34.0 3.56e-01 86.6% 67.7%
4h3tA02 1.10.132.100 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.53 35.0 3.56e-01 95.1% 67.4%
3kttB03 3.50.7.10 Alpha Beta › 3-Layer(bba) Sandwich › GroEL › GroEL 0.51 35.0 3.45e-01 87.3% 63.4%
1wnvB00 1.20.910.10 Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like 0.50 45.0 3.97e-01 98.6% 94.8%
3di5A00 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.50 42.0 4.21e-01 99.3% 87.9%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3462691 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.62 28.0 3.87e-01 71.8% 87.7%
3707644 610.2.1.1 ↗ alpha arrays › ERP29 C domain-like › Helical domain of Sec23/24 › Helical domain of Sec23/24 › Sec23_helical 0.60 30.0 3.28e-01 86.6% 55.7%
3587282 142.1.1.10 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › HTH_16 0.60 28.0 3.78e-01 93.7% 85.7%
3652757 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.60 30.0 3.44e-01 87.3% 64.0%
3233751 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.59 35.0 2.97e-01 100.0% 36.4%
5058570 1075.1.2.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX 0.59 34.0 3.47e-01 90.1% 57.1%
3666412 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.58 29.0 3.42e-01 90.1% 67.4%
3184919 620.1.1.6 ↗ alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › DinB_2 0.55 50.0 4.56e-01 99.3% 94.6%
None — 0.55 43.0 3.25e-01 84.5% 75.6%
4418839 602.1.1.1 ↗ alpha arrays › L-aspartase middle domain-like › L-aspartase middle domain-like › L-aspartase middle domain-like › Lyase_1 0.54 39.0 3.18e-01 76.1% 85.5%
None — 0.53 40.0 3.31e-01 78.9% 91.3%
3694417 602.1.1.1 ↗ alpha arrays › L-aspartase middle domain-like › L-aspartase middle domain-like › L-aspartase middle domain-like › Lyase_1 0.53 39.0 3.13e-01 76.8% 88.7%
4039311 5054.1.1.7 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › KdpA 0.52 40.0 3.75e-01 92.3% 65.9%
4267921 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.52 35.0 3.81e-01 79.6% 81.5%
4029943 3755.3.1.357 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › RIFIN 0.52 43.0 3.83e-01 90.1% 64.9%
3630462 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.52 33.0 3.34e-01 87.3% 64.3%
5065286 129.1.1.0 ↗ alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like 0.52 29.0 3.17e-01 88.0% 64.9%
3790375 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.52 33.0 3.56e-01 88.0% 74.4%
4144754 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.51 43.0 3.24e-01 92.3% 68.9%
4029803 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.50 34.0 3.55e-01 88.0% 75.4%
3210245 192.8.1.342 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › PHM7_cyt 0.50 23.0 3.05e-01 81.0% 78.8%