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KC821618.1__AGO48445.1__Phi10-1_gp105__00104

Bact-Vir

KC821618.1__AGO48445.1__Phi10-1_gp105__00104

Identity

Accession:
KC821618 ↗
Kingdom:
phage

Quality

81.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-61
PDB
Domain cluster: representative
CATH (60)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5zwzA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.82 70.0 6.51e-01 94.6% 98.6%
2eqkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.81 68.0 6.25e-01 92.9% 74.0%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 70.0 6.47e-01 96.4% 91.4%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.78 62.0 5.94e-01 87.5% 95.5%
1vwxM01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.78 64.0 5.53e-01 89.3% 61.2%
2eczA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.77 59.0 5.45e-01 82.1% 81.4%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.77 65.0 6.55e-01 92.9% 96.4%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.76 60.0 5.57e-01 85.7% 73.2%
2kymA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.76 55.0 4.69e-01 78.6% 60.2%
2dk3A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.76 64.0 5.58e-01 94.6% 77.9%
2rqtA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.75 55.0 5.42e-01 80.4% 93.4%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.75 57.0 5.44e-01 82.1% 93.8%
3pieB05 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.74 66.0 6.30e-01 98.2% 98.4%
1t0hA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.74 53.0 4.44e-01 76.8% 68.8%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.74 58.0 5.34e-01 85.7% 72.2%
4cshA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.74 63.0 4.52e-01 96.4% 39.0%
5zr6A02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.74 59.0 5.42e-01 91.1% 96.1%
3ntkA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 62.0 5.49e-01 92.9% 65.0%
2kdsA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.73 59.0 5.14e-01 89.3% 61.6%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 55.0 5.01e-01 82.1% 77.3%
3mp6A05 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 62.0 6.00e-01 94.6% 85.7%
3feoB02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 65.0 5.66e-01 100.0% 67.5%
1udlA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 55.0 4.53e-01 82.1% 56.1%
2p84A02 2.30.30.290 Mainly Beta › Roll › SH3 type barrels. › YopX-like domains 0.72 63.0 5.79e-01 98.2% 75.3%
2ldmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 58.0 5.94e-01 87.5% 92.5%
2bzyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 44.0 4.33e-01 71.4% 56.5%
6cnhA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.72 58.0 5.18e-01 89.3% 68.8%
2l5qA01 2.30.30.730 Mainly Beta › Roll › SH3 type barrels. › 0.71 52.0 5.42e-01 80.4% 88.0%
2evrA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 55.0 5.07e-01 85.7% 86.5%
2ke9A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 53.0 5.05e-01 82.1% 92.5%
2jiiA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.68 59.0 4.71e-01 96.4% 82.7%
1s1nA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 51.0 4.99e-01 82.1% 93.3%
3k2zA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.67 53.0 4.24e-01 91.1% 42.9%
2m89A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.64 52.0 4.00e-01 91.1% 80.6%
3e8lC00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.64 53.0 3.85e-01 98.2% 97.7%
1jheA00 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.63 50.0 3.95e-01 91.1% 43.5%
4crsA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.63 47.0 3.64e-01 83.9% 88.1%
2jzkA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.61 43.0 3.53e-01 75.0% 91.3%
1fhoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 50.0 4.05e-01 100.0% 64.7%
3jcuO01 2.40.160.30 Mainly Beta › Beta Barrel › Porin › Photosystem II, cytochrome c-550 precursor 0.59 46.0 3.36e-01 91.1% 85.8%
3sb1A01 3.30.1370.140 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › HupH hydrogenase expression protein, C-terminal domain 0.59 45.0 3.80e-01 100.0% 48.5%
3u4yA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 50.0 3.10e-01 96.4% 24.8%
1e2rA02 2.140.10.20 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase 0.58 47.0 2.90e-01 98.2% 16.9%
2zkmX01 2.30.29.240 Mainly Beta › Roll › PH-domain like › 0.58 51.0 3.48e-01 100.0% 50.0%
7snsB01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 45.0 3.41e-01 94.6% 70.4%
1ci3M02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.57 38.0 3.86e-01 71.4% 100.0%
4bg7A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.55 37.0 3.16e-01 71.4% 57.1%
4qq1C03 2.40.128.240 Mainly Beta › Beta Barrel › Lipocalin › 0.55 40.0 3.58e-01 82.1% 62.5%
2l2fA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.55 44.0 3.67e-01 94.6% 94.4%
2gu3A01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 45.0 4.36e-01 98.2% 87.7%
1lomA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.54 37.0 3.11e-01 73.2% 47.5%
3p91A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.53 42.0 2.82e-01 91.1% 46.9%
1b44D00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 36.0 2.98e-01 71.4% 79.2%
3v8uA03 2.40.128.240 Mainly Beta › Beta Barrel › Lipocalin › 0.52 38.0 3.39e-01 83.9% 64.4%
5yjwA00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.52 40.0 2.47e-01 92.9% 32.2%
2qpvA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 41.0 3.26e-01 94.6% 77.3%
2jhnA01 3.30.310.20 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › DNA-3-methyladenine glycosylase AlkA, N-terminal domain 0.51 42.0 3.40e-01 94.6% 60.2%
7qs0A01 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.51 40.0 2.92e-01 91.1% 63.6%
2lg1A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 42.0 3.46e-01 100.0% 69.6%
2o62A01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 41.0 3.25e-01 96.4% 56.5%
ECOD (81)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3840052 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.90 61.0 7.17e-01 80.4% 100.0%
4024913 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.86 69.0 6.55e-01 100.0% 73.8%
4680376 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.85 69.0 6.97e-01 92.9% 87.3%
4579331 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.84 71.0 6.81e-01 92.9% 81.0%
3537417 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.83 62.0 6.78e-01 83.9% 97.8%
3926207 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.83 65.0 6.74e-01 83.9% 98.1%
3706998 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.82 69.0 6.79e-01 98.2% 85.0%
3393297 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.82 71.0 6.21e-01 92.9% 66.3%
3264806 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.82 68.0 7.13e-01 96.4% 100.0%
5036498 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.82 72.0 6.44e-01 94.6% 74.7%
3218194 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.82 66.0 5.96e-01 87.5% 81.3%
3296864 4.1.1.236 beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.81 71.0 6.96e-01 100.0% 88.3%
4028731 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.81 71.0 6.69e-01 92.9% 95.4%
2106277 4.1.1.24 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L14e 0.81 67.0 5.09e-01 89.3% 41.9%
3457163 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.81 72.0 6.31e-01 96.4% 76.2%
4009688 4.1.1.297 beta barrels › SH3 › SH3 › SH3 › YajC 0.81 69.0 6.52e-01 94.6% 78.5%
3793656 4.1.1.169 beta barrels › SH3 › SH3 › SH3 › DUF4819 0.81 69.0 5.02e-01 92.9% 40.7%
2831843 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.81 67.0 5.36e-01 89.3% 48.1%
3778257 4.1.1.24 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L14e 0.81 67.0 4.88e-01 89.3% 37.1%
3624441 4.1.1.24 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L14e 0.81 67.0 4.88e-01 89.3% 37.1%
3372822 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.81 71.0 6.34e-01 94.6% 82.7%
3258767 4.1.1.24 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L14e 0.80 66.0 4.77e-01 89.3% 34.7%
3592540 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.80 69.0 6.75e-01 96.4% 86.7%
4261791 4.1.1.24 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L14e 0.80 66.0 4.78e-01 89.3% 35.9%
4165723 4.1.1.297 beta barrels › SH3 › SH3 › SH3 › YajC 0.80 67.0 6.39e-01 94.6% 78.5%
3304627 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.80 66.0 6.67e-01 89.3% 94.5%
3464886 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.78 71.0 6.94e-01 98.2% 93.3%
3486717 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.78 64.0 6.14e-01 91.1% 96.9%
3210707 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.78 57.0 5.61e-01 78.6% 96.7%
157526 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.78 61.0 5.91e-01 85.7% 98.4%
3502290 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 68.0 6.66e-01 96.4% 88.3%
3622389 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 68.0 6.43e-01 98.2% 81.5%
3820066 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 68.0 6.68e-01 96.4% 96.7%
3978624 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.77 67.0 5.05e-01 96.4% 43.1%
3214006 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.77 58.0 4.41e-01 82.1% 73.8%
3520311 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.77 66.0 5.20e-01 96.4% 56.5%
3819340 4.1.1.322 beta barrels › SH3 › SH3 › SH3 › GPKOW_C 0.76 66.0 5.06e-01 94.6% 84.2%
3253768 4.1.1.308 beta barrels › SH3 › SH3 › SH3 › PF31073 0.76 67.0 6.22e-01 96.4% 91.4%
3890642 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 57.0 4.29e-01 82.1% 85.7%
3480200 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.76 58.0 5.26e-01 82.1% 97.3%
3581631 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.76 57.0 5.41e-01 80.4% 90.8%
3774821 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 67.0 6.57e-01 96.4% 95.0%
3555993 4.1.1.77 beta barrels › SH3 › SH3 › SH3 › VGCC_beta4Aa_N 0.76 54.0 4.24e-01 76.8% 55.0%
3566631 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.76 57.0 5.09e-01 82.1% 75.0%
3885050 4.1.1.360 beta barrels › SH3 › SH3 › SH3 › KOW, G-patch_2 0.76 67.0 4.60e-01 96.4% 32.6%
3940829 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 54.0 4.34e-01 76.8% 60.0%
3787441 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.75 57.0 4.84e-01 82.1% 66.7%
25850 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 55.0 4.64e-01 78.6% 72.3%
4001976 4.1.1.77 beta barrels › SH3 › SH3 › SH3 › VGCC_beta4Aa_N 0.75 53.0 4.37e-01 76.8% 62.9%
4218488 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.75 58.0 5.12e-01 83.9% 76.2%
3549597 4.1.1.77 beta barrels › SH3 › SH3 › SH3 › VGCC_beta4Aa_N 0.75 56.0 4.30e-01 82.1% 67.7%
3924760 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 66.0 5.59e-01 98.2% 70.0%
3218201 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 68.0 5.95e-01 100.0% 96.2%
3623785 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.74 57.0 5.16e-01 83.9% 81.3%
3227565 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.73 56.0 5.50e-01 82.1% 98.3%
3514453 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.73 56.0 5.06e-01 82.1% 74.7%
3936225 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 53.0 4.96e-01 78.6% 80.0%
3999507 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 55.0 5.11e-01 82.1% 88.6%
3938415 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.72 53.0 5.08e-01 80.4% 93.8%
119300 3153.1.1.1 a+b two layers › PipX › PipX › PipX › PipX 0.71 53.0 4.60e-01 80.4% 52.9%
3503771 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.71 65.0 6.14e-01 100.0% 90.8%
3170649 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.71 61.0 5.32e-01 96.4% 95.3%
3164898 4.11.1.1 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.70 57.0 4.81e-01 91.1% 54.7%
3480491 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 62.0 5.65e-01 100.0% 80.0%
3631298 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.69 61.0 5.54e-01 100.0% 84.0%
3942573 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 50.0 5.00e-01 80.4% 91.4%
4036705 4.11.1.1 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.67 53.0 4.10e-01 91.1% 38.5%
4034335 4.11.1.1 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.64 50.0 4.17e-01 91.1% 47.3%
4220972 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.61 52.0 3.19e-01 98.2% 24.4%
3737480 5.1.7.2 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 10-bladed › Sortilin-Vps10 0.60 52.0 3.00e-01 98.2% 17.3%
3609520 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 43.0 3.73e-01 83.9% 87.4%
4953129 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.58 42.0 3.47e-01 82.1% 40.9%
3936442 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 41.0 3.54e-01 83.9% 76.0%
4077485 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.56 38.0 3.65e-01 71.4% 66.2%
3440964 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.55 44.0 2.88e-01 98.2% 25.7%
4031136 6043.1.1.3 a+b two layers › yfeY-like › yfeY-like › yfeY-like › CAP_assoc_N 0.54 36.0 3.62e-01 71.4% 73.3%
3427602 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.54 43.0 2.82e-01 98.2% 25.7%
3825916 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 38.0 3.67e-01 82.1% 90.0%
4979007 324.1.1.1 a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.52 37.0 2.81e-01 76.8% 31.4%
4136892 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.51 40.0 3.63e-01 92.9% 62.5%
3445792 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.50 42.0 2.61e-01 100.0% 17.4%