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KC821620.1__AGO48543.1__Phi18-3_gp031__00031
Bact-VirKC821620.1__AGO48543.1__Phi18-3_gp031__00031
Identity
- Accession:
- KC821620 ↗
- Kingdom:
- phage
Quality
91.7
mean pLDDT
Taxonomy
TaxID: 1327983
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-90
Domain cluster:
representative
CATH (37)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3keyA02 | 3.30.1370.230 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Stn1, C-terminal wHTH domain | 0.72 | 57.0 | 5.67e-01 | 85.7% | 92.0% |
| 2lrrA00 | 3.30.1370.50 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain | 0.64 | 44.0 | 4.74e-01 | 83.3% | 87.1% |
| 1tigA00 | 3.30.110.10 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Translation initiation factor 3 (IF-3), C-terminal domain | 0.63 | 56.0 | 5.59e-01 | 100.0% | 93.2% |
| 2m71A00 | 3.30.110.10 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Translation initiation factor 3 (IF-3), C-terminal domain | 0.63 | 56.0 | 5.37e-01 | 100.0% | 83.7% |
| 2vqcA00 | 1.10.10.1470 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › F-112 protein-like | 0.63 | 47.0 | 5.12e-01 | 84.5% | 95.7% |
| 4q5eA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.63 | 47.0 | 4.89e-01 | 100.0% | 89.3% |
| 3h0dA01 | 3.30.56.130 | Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › Transcriptional regulator CtsR, winged HTH domain | 0.61 | 46.0 | 4.95e-01 | 83.3% | 98.6% |
| 3zr5A02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.60 | 52.0 | 3.57e-01 | 96.4% | 49.3% |
| 2crqA01 | 3.30.110.10 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Translation initiation factor 3 (IF-3), C-terminal domain | 0.60 | 53.0 | 5.33e-01 | 100.0% | 97.7% |
| 4z5qA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.59 | 46.0 | 3.07e-01 | 85.7% | 76.3% |
| 5dx9A01 | 3.30.70.1020 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trehalose-6-phosphate phosphatase related protein; domain 2 | 0.59 | 42.0 | 4.54e-01 | 98.8% | 87.5% |
| 3gw2A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 39.0 | 3.86e-01 | 79.8% | 62.4% |
| 1ra6A02 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.59 | 38.0 | 3.56e-01 | 100.0% | 51.9% |
| 1wj5A01 | 1.10.10.980 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › CST, Suppressor of Cdc13 homolog, complex subunit STN1, N-terminal domain | 0.58 | 46.0 | 4.38e-01 | 85.7% | 100.0% |
| 1s2oA02 | 3.90.1070.10 | Alpha Beta › Alpha-Beta Complex › Hypothetical Protein Ta0175; Chain: A, domain 2 › | 0.57 | 39.0 | 4.17e-01 | 77.4% | 81.7% |
| 6qpqB00 | 1.10.10.580 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E | 0.57 | 43.0 | 4.38e-01 | 82.1% | 88.9% |
| 3bofA02 | 3.20.20.20 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Dihydropteroate synthase-like | 0.56 | 47.0 | 3.42e-01 | 95.2% | 44.6% |
| 6uvuA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 38.0 | 3.54e-01 | 78.6% | 55.8% |
| 1s12A00 | 3.30.70.1490 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp | 0.56 | 36.0 | 3.50e-01 | 98.8% | 57.4% |
| 2l01A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 41.0 | 4.31e-01 | 85.7% | 87.0% |
| 1sd4A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 39.0 | 4.27e-01 | 83.3% | 95.3% |
| 1u5tA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 44.0 | 4.59e-01 | 85.7% | 100.0% |
| 3bn0A00 | 3.30.1320.10 | Alpha Beta › 2-Layer Sandwich › S16 Ribosomal Protein; Chain: A; › Ribosomal protein S16 | 0.56 | 49.0 | 4.76e-01 | 100.0% | 96.8% |
| 1yirA00 | 3.20.140.10 | Alpha Beta › Alpha-Beta Barrel › nicotinate phosphoribosyltransferase › nicotinate phosphoribosyltransferase | 0.55 | 46.0 | 3.00e-01 | 92.9% | 31.0% |
| 5tfmA01 | 2.60.40.60 | Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins | 0.55 | 37.0 | 3.58e-01 | 97.6% | 59.2% |
| 2cpcA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 37.0 | 3.66e-01 | 97.6% | 65.5% |
| 4bpe700 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 41.0 | 3.91e-01 | 83.3% | 66.3% |
| 3qx3B03 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.55 | 42.0 | 4.04e-01 | 98.8% | 71.0% |
| 2ekgA02 | 3.20.20.220 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › | 0.55 | 47.0 | 3.43e-01 | 96.4% | 52.7% |
| 3l09A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 39.0 | 3.94e-01 | 83.3% | 77.4% |
| 2mh2A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 38.0 | 4.12e-01 | 82.1% | 96.9% |
| 4mtlA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.54 | 47.0 | 3.59e-01 | 100.0% | 69.7% |
| 2pggA01 | 3.90.1730.10 | Alpha Beta › Alpha-Beta Complex › Infectious bursal virus vp1 polymerase fold › Infectious bursal virus vp1 polymerase domain | 0.54 | 39.0 | 2.66e-01 | 78.6% | 58.6% |
| 2zkzC00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 35.0 | 3.53e-01 | 83.3% | 66.7% |
| 4hkqA01 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.50 | 44.0 | 3.72e-01 | 97.6% | 69.4% |
| 3qdhA01 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 42.0 | 3.52e-01 | 95.2% | 53.2% |
| 5a4aA00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.50 | 43.0 | 3.34e-01 | 100.0% | 61.1% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1145702 | 101.1.2.134 ↗ | alpha arrays › HTH › HTH › winged helix domain › Stn1_C | 0.73 | 57.0 | 5.68e-01 | 85.7% | 92.1% |
| 3502555 | 328.3.1.0 ↗ | a+b two layers › IF3-like › Translation initiation factor IF3, C-terminal domain › Translation initiation factor IF3, C-terminal domain | 0.66 | 56.0 | 5.41e-01 | 100.0% | 82.1% |
| 3724304 | 101.1.2.519 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF7791 | 0.65 | 46.0 | 4.42e-01 | 75.0% | 82.0% |
| 3638063 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.64 | 47.0 | 4.31e-01 | 77.4% | 93.6% |
| 4927828 | 328.1.1.0 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like | 0.64 | 57.0 | 5.44e-01 | 100.0% | 87.0% |
| 2722837 | 328.9.1.1 ↗ | a+b two layers › IF3-like › SepF C-terminal domain › SepF C-terminal domain › SepF | 0.64 | 50.0 | 4.99e-01 | 100.0% | 84.7% |
| 4285074 | 328.3.1.1 ↗ | a+b two layers › IF3-like › Translation initiation factor IF3, C-terminal domain › Translation initiation factor IF3, C-terminal domain › IF3_C | 0.63 | 56.0 | 5.11e-01 | 100.0% | 74.5% |
| 4354369 | 242.1.1.5 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N | 0.62 | 49.0 | 4.45e-01 | 83.3% | 71.8% |
| 4391313 | 328.3.1.1 ↗ | a+b two layers › IF3-like › Translation initiation factor IF3, C-terminal domain › Translation initiation factor IF3, C-terminal domain › IF3_C | 0.62 | 56.0 | 5.32e-01 | 100.0% | 83.0% |
| 4314924 | 328.3.1.1 ↗ | a+b two layers › IF3-like › Translation initiation factor IF3, C-terminal domain › Translation initiation factor IF3, C-terminal domain › IF3_C | 0.62 | 52.0 | 4.85e-01 | 100.0% | 73.6% |
| 4194495 | 328.3.1.1 ↗ | a+b two layers › IF3-like › Translation initiation factor IF3, C-terminal domain › Translation initiation factor IF3, C-terminal domain › IF3_C | 0.61 | 53.0 | 5.12e-01 | 100.0% | 86.0% |
| 4113577 | 328.3.1.1 ↗ | a+b two layers › IF3-like › Translation initiation factor IF3, C-terminal domain › Translation initiation factor IF3, C-terminal domain › IF3_C | 0.61 | 54.0 | 5.02e-01 | 100.0% | 78.1% |
| 4503816 | 328.3.1.1 ↗ | a+b two layers › IF3-like › Translation initiation factor IF3, C-terminal domain › Translation initiation factor IF3, C-terminal domain › IF3_C | 0.61 | 51.0 | 4.97e-01 | 100.0% | 83.2% |
| 4660214 | 328.3.1.1 ↗ | a+b two layers › IF3-like › Translation initiation factor IF3, C-terminal domain › Translation initiation factor IF3, C-terminal domain › IF3_C | 0.61 | 55.0 | 5.44e-01 | 100.0% | 93.3% |
| 4218255 | 328.3.1.1 ↗ | a+b two layers › IF3-like › Translation initiation factor IF3, C-terminal domain › Translation initiation factor IF3, C-terminal domain › IF3_C | 0.61 | 52.0 | 5.10e-01 | 100.0% | 90.0% |
| 4336441 | 328.3.1.1 ↗ | a+b two layers › IF3-like › Translation initiation factor IF3, C-terminal domain › Translation initiation factor IF3, C-terminal domain › IF3_C | 0.61 | 53.0 | 5.12e-01 | 100.0% | 86.3% |
| 4278271 | 328.3.1.1 ↗ | a+b two layers › IF3-like › Translation initiation factor IF3, C-terminal domain › Translation initiation factor IF3, C-terminal domain › IF3_C | 0.61 | 53.0 | 5.25e-01 | 100.0% | 91.1% |
| 4346533 | 328.3.1.1 ↗ | a+b two layers › IF3-like › Translation initiation factor IF3, C-terminal domain › Translation initiation factor IF3, C-terminal domain › IF3_C | 0.60 | 52.0 | 4.82e-01 | 100.0% | 75.2% |
| 3960260 | 328.3.1.1 ↗ | a+b two layers › IF3-like › Translation initiation factor IF3, C-terminal domain › Translation initiation factor IF3, C-terminal domain › IF3_C | 0.60 | 50.0 | 4.69e-01 | 100.0% | 73.6% |
| 4156356 | 101.1.2.55 ↗ | alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB | 0.59 | 45.0 | 4.41e-01 | 85.7% | 76.7% |
| 3838198 | 328.3.1.1 ↗ | a+b two layers › IF3-like › Translation initiation factor IF3, C-terminal domain › Translation initiation factor IF3, C-terminal domain › IF3_C | 0.59 | 51.0 | 4.94e-01 | 100.0% | 86.3% |
| 3708479 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 35.0 | 3.84e-01 | 70.2% | 72.9% |
| 3600265 | 320.1.1.0 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain | 0.57 | 48.0 | 4.38e-01 | 95.2% | 93.0% |
| 4555708 | 328.3.1.2 ↗ | a+b two layers › IF3-like › Translation initiation factor IF3, C-terminal domain › Translation initiation factor IF3, C-terminal domain › mIF3 | 0.57 | 51.0 | 4.67e-01 | 100.0% | 76.4% |
| 4623814 | 131.1.1.15 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › Ppx-GppA_III | 0.57 | 47.0 | 3.69e-01 | 94.0% | 59.5% |
| 5054944 | 2006.1.1.11 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase_3 | 0.57 | 44.0 | 3.23e-01 | 97.6% | 29.6% |
| 3970755 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 47.0 | 4.70e-01 | 100.0% | 90.0% |
| 3936425 | 101.1.2.118 ↗ | alpha arrays › HTH › HTH › winged helix domain › Dcc1 | 0.56 | 39.0 | 4.28e-01 | 98.8% | 95.4% |
| 3541218 | 2004.1.1.589 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › URGCP, URGCP_GTPase | 0.56 | 49.0 | 2.89e-01 | 100.0% | 18.7% |
| 4972648 | 247.1.1.1 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B | 0.54 | 43.0 | 3.03e-01 | 86.9% | 46.7% |
| 3971688 | 101.1.2.6 ↗ | alpha arrays › HTH › HTH › winged helix domain › GntR | 0.54 | 46.0 | 4.38e-01 | 100.0% | 79.0% |
| 5026983 | 247.1.1.11 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2 | 0.54 | 45.0 | 3.12e-01 | 94.0% | 31.3% |
| 5022455 | 812.1.1.0 ↗ | a+b duplicates or obligate multimers › MinE-like › Cell division protein MinE topological specificity domain › Cell division protein MinE topological specificity domain | 0.54 | 47.0 | 4.72e-01 | 98.8% | 94.1% |
| 5061659 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 38.0 | 3.97e-01 | 84.5% | 86.7% |
| 4519566 | 4955.1.1.0 ↗ | a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | 0.52 | 35.0 | 3.63e-01 | 97.6% | 73.8% |
| 4928347 | 304.48.1.4 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Guanylate_cyc | 0.52 | 43.0 | 3.55e-01 | 98.8% | 97.2% |
| 4950303 | 101.1.2.751 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF6293_C | 0.52 | 39.0 | 3.69e-01 | 83.3% | 84.8% |
| 4969546 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 38.0 | 3.90e-01 | 83.3% | 83.7% |
| 3172340 | 2004.1.1.132 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DLIC | 0.51 | 46.0 | 3.32e-01 | 100.0% | 77.1% |
| 1682152 | 2007.5.1.14 ↗ | a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › OSK | 0.50 | 43.0 | 3.34e-01 | 100.0% | 60.8% |
| 3738074 | 3012.1.1.1 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › Trehalose_PPase | 0.50 | 37.0 | 3.71e-01 | 98.8% | 74.4% |