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KC821620.1__AGO48579.1__Phi18-3_gp067__00067
Bact-VirKC821620.1__AGO48579.1__Phi18-3_gp067__00067
Identity
- Accession:
- KC821620 ↗
- Kingdom:
- phage
Quality
89.5
mean pLDDT
Taxonomy
TaxID: 1327983
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-56
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ww3A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.53 | 42.0 | 2.84e-01 | 92.6% | 30.0% |
| 1m1fB00 | 2.30.30.110 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 40.0 | 3.41e-01 | 92.6% | 80.0% |
| 6ryvA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 37.0 | 3.57e-01 | 92.6% | 64.6% |
| 5tdeA02 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.51 | 38.0 | 3.35e-01 | 81.5% | 87.8% |
| 5c86A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 37.0 | 3.16e-01 | 85.2% | 81.2% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3986892 | 70.4.1.8 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_cement | 0.76 | 48.0 | 4.29e-01 | 98.1% | 46.7% |
| 3403550 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.63 | 45.0 | 3.68e-01 | 92.6% | 40.0% |
| 147056 | 3268.1.1.1 ↗ | a+b two layers › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase › XdhC_CoxI | 0.63 | 52.0 | 4.48e-01 | 98.1% | 83.0% |
| 3391207 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.63 | 44.0 | 3.78e-01 | 92.6% | 44.9% |
| 4367301 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 54.0 | 5.38e-01 | 98.1% | 96.4% |
| 1145775 | 3268.1.1.1 ↗ | a+b two layers › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase › XdhC_CoxI | 0.61 | 53.0 | 4.58e-01 | 100.0% | 82.4% |
| 4966131 | 4.1.3.1 ↗ | beta barrels › SH3 › SH3 › Calcium-binding protein CcbP › Calci_bind_CcbP | 0.60 | 50.0 | 3.99e-01 | 92.6% | 52.7% |
| 4221218 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.58 | 40.0 | 3.44e-01 | 92.6% | 42.1% |
| 4347063 | 4.1.1.140 ↗ | beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom | 0.55 | 46.0 | 3.54e-01 | 100.0% | 99.3% |
| 3925634 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.52 | 41.0 | 3.82e-01 | 90.7% | 97.1% |
D2
high
residues 64-125
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3lx7A01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 41.0 | 4.51e-01 | 91.9% | 89.1% |
| 3p8bB02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 49.0 | 4.90e-01 | 100.0% | 90.3% |
| 2eqjA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 45.0 | 4.45e-01 | 100.0% | 78.8% |
| 3tfmA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.56 | 46.0 | 4.02e-01 | 100.0% | 71.6% |
| 4fdyA02 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.56 | 43.0 | 3.52e-01 | 98.4% | 41.8% |
| 1y96D00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 47.0 | 4.31e-01 | 100.0% | 73.5% |
| 2eqmA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 42.0 | 4.40e-01 | 93.5% | 98.1% |
| 2digA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 43.0 | 4.19e-01 | 100.0% | 80.9% |
| 2vc8A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 46.0 | 4.46e-01 | 100.0% | 86.1% |
| 3pe0A03 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.54 | 44.0 | 4.39e-01 | 100.0% | 89.1% |
| 2btwA00 | 3.90.70.30 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Phytochelatin synthase, N-terminal domain | 0.54 | 46.0 | 3.24e-01 | 100.0% | 37.1% |
| 1mhnA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 42.0 | 4.27e-01 | 96.8% | 89.8% |
| 2d9tA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 38.0 | 4.12e-01 | 91.9% | 98.0% |
| 1vq8T00 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 46.0 | 3.78e-01 | 100.0% | 66.4% |
| 2b2cA01 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.53 | 43.0 | 4.28e-01 | 91.9% | 89.1% |
| 3b79A00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.53 | 41.0 | 3.35e-01 | 100.0% | 44.0% |
| 3hfnA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 41.0 | 4.14e-01 | 100.0% | 91.7% |
| 1ep3B01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.52 | 44.0 | 3.87e-01 | 100.0% | 67.7% |
| 3h41A03 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.52 | 43.0 | 3.53e-01 | 98.4% | 93.7% |
| 2qf4A02 | 2.40.10.350 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 2 | 0.51 | 39.0 | 3.49e-01 | 100.0% | 58.2% |
| 5cemA02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.50 | 34.0 | 2.55e-01 | 71.0% | 34.6% |
| 7byjA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.50 | 42.0 | 3.76e-01 | 100.0% | 76.8% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3475240 | 4.1.1.304 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3-C_UBE2O | 0.64 | 50.0 | 5.19e-01 | 95.2% | 98.2% |
| 3267329 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 45.0 | 3.60e-01 | 100.0% | 38.4% |
| 3274701 | 4.1.1.239 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O | 0.62 | 50.0 | 5.13e-01 | 95.2% | 91.7% |
| 3243909 | 4.1.1.25 ↗ | beta barrels › SH3 › SH3 › SH3 › PAZ | 0.62 | 55.0 | 4.02e-01 | 100.0% | 54.5% |
| 3354076 | 4.1.1.330 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O, SH3-C_UBE2O | 0.62 | 53.0 | 4.19e-01 | 96.8% | 53.1% |
| 3881126 | 4.1.1.361 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_KDM3B, PWWP_KDM3B, DUF7030 | 0.61 | 52.0 | 3.56e-01 | 100.0% | 30.2% |
| 3678872 | 4.1.1.239 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O | 0.61 | 52.0 | 4.96e-01 | 96.8% | 93.3% |
| 1031172 | 4.1.1.113 ↗ | beta barrels › SH3 › SH3 › SH3 › TraI_2B | 0.61 | 50.0 | 4.79e-01 | 100.0% | 80.6% |
| 4944596 | 4.11.1.0 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase | 0.60 | 52.0 | 4.23e-01 | 100.0% | 60.0% |
| 3533770 | 4.1.1.101 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_2 | 0.60 | 47.0 | 3.94e-01 | 100.0% | 50.5% |
| 3850775 | 4.1.1.101 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_2 | 0.59 | 46.0 | 4.60e-01 | 98.4% | 81.5% |
| 3558188 | 4.1.1.101 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_2 | 0.59 | 46.0 | 4.35e-01 | 100.0% | 70.7% |
| 4998113 | 4.1.1.28 ↗ | beta barrels › SH3 › SH3 › SH3 › BPL_C | 0.57 | 39.0 | 4.28e-01 | 93.5% | 100.0% |
| 3475462 | 4.1.1.304 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3-C_UBE2O | 0.57 | 45.0 | 4.12e-01 | 96.8% | 64.7% |
| 3315510 | 4.1.1.246 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_Coilin | 0.56 | 49.0 | 4.11e-01 | 100.0% | 77.3% |
| 4366176 | 4.1.1.178 ↗ | beta barrels › SH3 › SH3 › SH3 › ribosomal_L24 | 0.56 | 50.0 | 4.13e-01 | 100.0% | 70.0% |
| 3925589 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 47.0 | 4.54e-01 | 96.8% | 95.7% |
| 4614716 | 4.1.1.292 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_Rv2311 | 0.56 | 49.0 | 4.73e-01 | 96.8% | 100.0% |
| 3924375 | 4.1.1.237 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 | 0.56 | 49.0 | 4.66e-01 | 100.0% | 92.0% |
| 4608704 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.56 | 48.0 | 3.30e-01 | 100.0% | 27.5% |
| 3394559 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 48.0 | 4.10e-01 | 100.0% | 78.1% |
| 4400641 | 4.1.1.397 ↗ | beta barrels › SH3 › SH3 › SH3 › PF29622 | 0.55 | 48.0 | 4.46e-01 | 96.8% | 95.0% |
| 3607985 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 45.0 | 3.80e-01 | 100.0% | 53.3% |
| 3419491 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 46.0 | 4.70e-01 | 100.0% | 95.0% |
| 3703970 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 46.0 | 3.96e-01 | 100.0% | 72.4% |
| 3625817 | 4.1.1.219 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM12_LSM | 0.54 | 47.0 | 4.34e-01 | 100.0% | 76.2% |
| 4302391 | 4.1.1.398 ↗ | beta barrels › SH3 › SH3 › SH3 › YolD | 0.54 | 42.0 | 4.22e-01 | 100.0% | 86.2% |
| 3660755 | 4.8.1.21 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › PTM_DIR17_Tudor | 0.54 | 41.0 | 3.94e-01 | 100.0% | 72.0% |
| 3615365 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.54 | 46.0 | 3.17e-01 | 100.0% | 35.7% |
| 3503000 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 46.0 | 4.19e-01 | 100.0% | 91.8% |
| 4030603 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 44.0 | 4.31e-01 | 100.0% | 85.3% |
| 3240407 | 4.1.1.237 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 | 0.53 | 45.0 | 4.41e-01 | 100.0% | 98.6% |
| 3080538 | 4.1.1.7 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 | 0.53 | 46.0 | 3.96e-01 | 100.0% | 70.3% |
| 3437523 | 4.1.1.303 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus | 0.52 | 42.0 | 4.09e-01 | 100.0% | 85.7% |
| 3812216 | 4.1.1.303 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus | 0.51 | 40.0 | 3.89e-01 | 100.0% | 80.0% |
| 4208040 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.51 | 43.0 | 4.11e-01 | 100.0% | 83.6% |
| 3609256 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.51 | 43.0 | 3.89e-01 | 96.8% | 74.1% |